User:Wayne Decatur/Sequence analysis tools: Difference between revisions
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* [http://www.nupack.org/ NUPACK] - "NUPACK is a growing software suite for the analysis and design of nucleic acid systems." | * [http://www.nupack.org/ NUPACK] - "NUPACK is a growing software suite for the analysis and design of nucleic acid systems." | ||
Fungal Genome Resources | == Fungal Genome Resources == | ||
http://fungalgenomes.org/ | http://fungalgenomes.org/ | ||
http://1000.fungalgenomes.org/home/ | http://1000.fungalgenomes.org/home/ | ||
http://fungidb.org/fungidb/ | http://fungidb.org/fungidb/ (about it –> http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245123/) | ||
http://genome.jgi.doe.gov/programs/fungi/1000fungalgenomes.jsf | http://genome.jgi.doe.gov/programs/fungi/1000fungalgenomes.jsf <— nice graphic of situation related to 1000 fungal genomes project | ||
http://genome.jgi-psf.org/programs/fungi/index.jsf | http://genome.jgi-psf.org/programs/fungi/index.jsf | ||
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http://fungi.ensembl.org/index.html | http://fungi.ensembl.org/index.html | ||
http://en.wikipedia.org/wiki/List_of_sequenced_fungi_genomes <– how current is it??? | |||
== For genomic arrangement (synteny) comparisons/Fungal Genomis Resources == | |||
Synteny Viewer listed under every [http://www.yeastgenome.org/ SGD] gene on Sequence tab, near bottom of page | |||
Synteny Viewer listed under every [ | |||
http://www.genomicus.biologie.ens.fr/genomicus-fungi-19.01/cgi-bin/search.pl | http://www.genomicus.biologie.ens.fr/genomicus-fungi-19.01/cgi-bin/search.pl | ||
[Yeast Gene Order Browser (YGOB)] (http://ygob.ucd.ie/) | [Yeast Gene Order Browser (YGOB)] (http://ygob.ucd.ie/) | ||
