3dxt: Difference between revisions

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~~[[Image:3dxt.png|left|200px]]~~

==Crystal structure of the catalytic core domain of JMJD2D==

~~{{STRUCTURE_3dxt| PDB=3dxt | SCENE= }}~~

== Structural highlights ==

<table><tr><td colspan='2'>[[3dxt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DXT FirstGlance]. <br>

===Crystal structure of the catalytic core domain of JMJD2D===

</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>

<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">jmjd2d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dxt RCSB], [http://www.ebi.ac.uk/pdbsum/3dxt PDBsum]</span></td></tr>

==~~About this Structure~~==

</table>

[[3dxt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA].

== Evolutionary Conservation ==

[[Image:Consurf_key_small.gif|200px|right]]

Check<jmol>

<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/3dxt_consurf.spt"</scriptWhenChecked>

<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>

<text>to colour the structure by Evolutionary Conservation</text>

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].

__TOC__

</StructureSection>

[[Category: Homo sapiens]]

[[Category: Chen, Z.]]

[[Category: Chen, Z]]

[[Category: Zhang, G.]]

[[Category: Zhang, G]]

[[Category: Chromatin regulator]]

[[Category: Dioxygenase]]

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@@ Line 1: / Line 1: @@
-[[Image:3dxt.png|left|200px]]
+==Crystal structure of the catalytic core domain of JMJD2D==
+<StructureSection load='3dxt' size='340' side='right' caption='[[3dxt]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-{{STRUCTURE_3dxt|  PDB=3dxt  |  SCENE=  }}
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3dxt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DXT FirstGlance]. <br>
-===Crystal structure of the catalytic core domain of JMJD2D===
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">jmjd2d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dxt RCSB], [http://www.ebi.ac.uk/pdbsum/3dxt PDBsum]</span></td></tr>
-==About this Structure==
+</table>
-[[3dxt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA].
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/3dxt_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Homo sapiens]]
-[[Category: Chen, Z.]]
+[[Category: Chen, Z]]
-[[Category: Zhang, G.]]
+[[Category: Zhang, G]]
 [[Category: Chromatin regulator]]
 [[Category: Dioxygenase]]