DNA ligase: Difference between revisions

===ATP-dependent LigD===

[[3p4h]], [[3ta5]], [[3ta7]] – LigD N-terminal – ''Candidatus korarchaeum cryptofilum''<br />

[[3gde]] – LigD – ''Archaeoglobus fulgidus''<br />

[[2hiv]] – SsLigD – ''Sulfolobus solfataricus''<br />

[[2hix]] - SsLigD + ATP<br />

[[2cfm]] - LigD + AMP – ''Pyrococcus furiosus''<br />

[[2fao]] - PaLigD polymerase domain – ''Pseudomonas aeruginosa''<br />

[[2faq]], [[2far]] - PaLigD polymerase domain + ATP + Mn<br />

[[1a0i]] – LigD + ATP – Bacteriophage T7<br />

[[4eq5]] – LigD + AMP – ''Thermococcus sibiricus''

===NAD+-dependent LigD===

[[3jsl]], [[3jsn]] - LigD adenylation domain – ''Staphylococcus aureus''<br />

[[3ba8]], [[3ba9]], [[3baa]], [[3bab]], [[3bac]], [[4eeq]], [[4efb]], [[4efe]], [[4lh6]], [[4lh7]] - EfLigD adenylation domain + NMN + inhibitor – ''Enterococcus faecalis''<br />

[[1ta8]], [[1tae]] - EfLigD adenylation domain<br />

[[1zau]] - MtLigD adenylation domain – ''Mycobacterium tuberculosis''<br />

[[3sgi]] – MtLigD (mutant) + AMP<br />

[[1v9p]], [[1dgs]] – LigD – ''Thermos filiformis''<br />

[[1b04]] – LigD adenylation domain (mutant) – ''Geobacillus stearothermophilus''<br />

[[4glw]] – LigD A + NMN + inhibitor – ''Streptococcus pneumoniae''<br />

[[4glx]] – LigD + DNA + inhibitor - ''Escherichia coli''<br />

===LigD===

[[2q2t]] – CvLigD + DNA + AMP + CMP – Chlorella virus<br />

[[2q2u]], [[ 1p8l]], [[ 1fvi]] - CvLigD + DNA + mononucleotide<br />

[[2owo]] – LigD + DNA + AMP + CMP – ''Escherichia coli''<br />

[[3qwu]] – LigD – ''Aquifex aeolicus''<br />

[[3pn1]] – HiLigD adenylation domain + inhibitor – ''Haemophilus influenzae''<br />

[[3uq8]] - HiLigD adenylation domain + NAD<br />

[[1l7b]] – LigD BRCT domain – ''Thermos thermophilus'' - NMR<br />

[[3rr5]] – LigD - ''Thermococcus''

===Mammalian LigD I===

[[1x9n]] – hLigD I + DNA + AMP + CMP – human<br />

[[2od8]] – LigD I residues 32-53 + PCNA

===Mammalian LigD III===

[[3l2p]] – hLigD III residues 257-833 + DNA<br />

[[1uw0]] - hLigD III zinc-finger domain residues 1-117 – NMR<br />

[[1imo]], [[ 1in1]] - hLigD III BRCTdomain – NMR<br />

[[3pc7]] - hLigD III BRCTdomain<br />

[[3pc8]] - hLigD III BRCTdomain (mutant) + XRCC1<br />

[[3qvg]] - hLigD III BRCTdomain + XRCC1

===Mammalian LigD IV===