3gyk: Difference between revisions
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==The crystal structure of a thioredoxin-like oxidoreductase from Silicibacter pomeroyi DSS-3== | |||
<StructureSection load='3gyk' size='340' side='right' caption='[[3gyk]], [[Resolution|resolution]] 1.76Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[3gyk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GYK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GYK FirstGlance]. <br> | |||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SPOA0362 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=89184 Ruegeria pomeroyi])</td></tr> | |||
== | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gyk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gyk RCSB], [http://www.ebi.ac.uk/pdbsum/3gyk PDBsum], [http://www.topsan.org/Proteins/MCSG/3gyk TOPSAN]</span></td></tr> | ||
[[3gyk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GYK OCA]. | </table> | ||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/3gyk_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | |||
<div style="clear:both"></div> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Ruegeria pomeroyi]] | [[Category: Ruegeria pomeroyi]] | ||
[[Category: Fan, Y | [[Category: Fan, Y]] | ||
[[Category: Joachimiak, A | [[Category: Joachimiak, A]] | ||
[[Category: Keigher, L | [[Category: Keigher, L]] | ||
[[Category: | [[Category: Structural genomic]] | ||
[[Category: Marshall, N | [[Category: Marshall, N]] | ||
[[Category: Apc61738 2]] | [[Category: Apc61738 2]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
[[Category: Oxidoreductase]] | [[Category: Oxidoreductase]] | ||
[[Category: Protein structure initiative | [[Category: PSI, Protein structure initiative]] | ||
[[Category: Silicibacter pomeroyi dss-3]] | [[Category: Silicibacter pomeroyi dss-3]] | ||
[[Category: Thioredoxin-like]] | [[Category: Thioredoxin-like]] | ||
