Sigma factor: Difference between revisions

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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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===Sigma factor===
*Sigma factor


[[1ku2]] – TaSF region 1.2-3.1 – ''Thermus aquaticus''<br />
**[[1ku2]] – TaSF region 1.2-3.1 – ''Thermus aquaticus''<br />
[[1ku3]] – TaSF region 4 (mutant)<br />
**[[1ku3]] – TaSF region 4 (mutant)<br />
[[3les]] – TaSF residues 93-271<br />
**[[3les]] – TaSF residues 93-271<br />
[[1sig]] – EcSF – ''Escherichia coli''<br />
**[[1sig]] – EcSF – ''Escherichia coli''<br />
[[2mao]] – EcSF region 2 - NMR<br />
**[[2mao]] – EcSF region 2 - NMR<br />
[[1tty]] – TmSF-70 region 4 – ''Thermotoga maritima''<br />
**[[1tty]] – TmSF-70 region 4 – ''Thermotoga maritima''<br />
[[1tty]] – TmSF-70 region 1.1 (mutant) - NMR<br />
**[[1tty]] – TmSF-70 region 1.1 (mutant) - NMR<br />
[[2ahq]] – AaSF-54 C terminal – ''Aquifex aeolicus'' - NMR<br />
**[[2ahq]] – AaSF-54 C terminal – ''Aquifex aeolicus'' - NMR<br />
[[2k9l]], [[2k9m]] – AaSF-54 core domain - NMR<br />
**[[2k9l]], [[2k9m]] – AaSF-54 core domain - NMR<br />
[[3mzy]] – SF-H – ''Fusobacterium nucleatum''<br />
**[[3mzy]] – SF-H – ''Fusobacterium nucleatum''<br />


===Sigma factor complex with DNA===
*Sigma factor complex with DNA


[[3ugo]], [[3ugp]] - TaSF region 2 + DNA<br />
**[[3ugo]], [[3ugp]] - TaSF region 2 + DNA<br />
[[4ki2]] - TaSF region 2-3 + DNA<br />
**[[4ki2]] - TaSF region 2-3 + DNA<br />
[[2h27]] – EcSF-E region 4 + DNA<br />
**[[2h27]] – EcSF-E region 4 + DNA<br />
[[2map]] – EcSF region 2 + DNA - NMR<br />
**[[2map]] – EcSF region 2 + DNA - NMR<br />
[[2o8k]], [[2o9l]] – AaSF-54 C terminal + DNA - NMR<br />
**[[2o8k]], [[2o9l]] – AaSF-54 C terminal + DNA - NMR<br />


===Sigma factor complex with protein===
*Sigma factor complex with protein


[[3lev]] – TaSF residues 93-271 + antibody<br />
**[[3lev]] – TaSF residues 93-271 + antibody<br />
[[1or7]] – EcSF-E + σ-E factor negative regulatory protein <br />
**[[1or7]] – EcSF-E + σ-E factor negative regulatory protein <br />
[[4lup]] – EcSF residues 3-92 + EcSF region 2 <br />
**[[4lup]] – EcSF residues 3-92 + EcSF region 2 <br />
[[1tlh]] – EcSF-70 region 4 + anti-σ factor<br />
**[[1tlh]] – EcSF-70 region 4 + anti-σ factor<br />
[[2p7v]] – EcSF-70 region 4 + regulator of σ D<br />
**[[2p7v]] – EcSF-70 region 4 + regulator of σ D<br />
[[1rp3]], [[1sc5]] – AaSF-28 + anti-σ factor FLGM <br />
**[[1rp3]], [[1sc5]] – AaSF-28 + anti-σ factor FLGM <br />
[[3hug]] – MtSF + membrane protein – ''Mycobacterium tuberculosis''<br />
**[[3hug]] – MtSF + membrane protein – ''Mycobacterium tuberculosis''<br />
[[4nqw]] – MtSF-K region 4 + anti-σ factor<br />
**[[4nqw]] – MtSF-K region 4 + anti-σ factor<br />
[[3wod]] – TtSF + RNAP subunits α,β,β’,ω - ''Thermus thermophilus'' <br />
**[[3wod]] – TtSF + RNAP subunits α,β,β’,ω - ''Thermus thermophilus'' <br />
[[4mq9]] – TtSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br />
**[[4mq9]] – TtSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br />
[[1l9u]] – TaSF region 1.1-4 + RNAP subunits α,β,β’,ω<br />
**[[1l9u]] – TaSF region 1.1-4 + RNAP subunits α,β,β’,ω<br />
[[4mex]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br />
**[[4mex]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br />
[[4mey]], [[4ljz]], [[4lk1]] – EcSF-70 + RNAP subunits α,β,β’,ω <br />
**[[4mey]], [[4ljz]], [[4lk1]] – EcSF-70 + RNAP subunits α,β,β’,ω <br />
[[4lk0]], [[4llg]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor<br />
**[[4lk0]], [[4llg]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor<br />
[[4cxf]] – SF CNRH + CNRY – ''Cupriavidus metallidurans''<br />
**[[4cxf]] – SF CNRH + CNRY – ''Cupriavidus metallidurans''<br />
[[4g6d]], [[4g8x]], [[4g94]] – SF-70 region 4 + Orf067 – ''Staphylococcus aureus''<br />
**[[4g6d]], [[4g8x]], [[4g94]] – SF-70 region 4 + Orf067 – ''Staphylococcus aureus''<br />


===Sigma factor complex with protein and DNA===
*Sigma factor complex with protein and DNA
 
[[1rio]] - TaSF region 4 + repression protein CI + DNA<br />
[[4oin]], [[4oip]], [[4oiq]], [[4oir]] – TtSF-A + RNAP subunits α,β,β’,ω + antibiotic + DNA<br />
[[4oio]] – TtSF-A + RNAP subunits α,β,β’,ω + DNA<br />
[[3n97]] – TaSF region 4 + RNAP subunits α + DNA<br />
[[1l9u]] – TaSF + RNAP subunits α,β,β’,ω + DNA – Cryo EM  <br />
[[3iyd]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + catabolite gene activator + DNA<br />


**[[1rio]] - TaSF region 4 + repression protein CI + DNA<br />
**[[4oin]], [[4oip]], [[4oiq]], [[4oir]] – TtSF-A + RNAP subunits α,β,β’,ω + antibiotic + DNA<br />
**[[4oio]] – TtSF-A + RNAP subunits α,β,β’,ω + DNA<br />
**[[3n97]] – TaSF region 4 + RNAP subunits α + DNA<br />
**[[1l9u]] – TaSF + RNAP subunits α,β,β’,ω + DNA – Cryo EM  <br />
**[[3iyd]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + catabolite gene activator + DNA<br />
}}
== References ==
== References ==