3oga: Difference between revisions

Line 1:

~~{{STRUCTURE_3oga| PDB=3oga | SCENE= }}~~

==1.75 Angstrom resolution crystal structure of a putative NTP pyrophosphohydrolase (yfaO) from Salmonella typhimurium LT2==

===1.75 Angstrom resolution crystal structure of a putative NTP pyrophosphohydrolase (yfaO) from Salmonella typhimurium LT2===

== Structural highlights ==

==~~Function~~==

<table><tr><td colspan='2'>[[3oga]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OGA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OGA FirstGlance]. <br>

[[~~http://www.uniprot.org/uniprot/NUDI_SALTY NUDI_SALTY~~]] ~~Catalyzes the hydrolysis of nucleoside triphosphates~~, ~~with a preference for pyrimidine deoxynucleoside triphosphates (dUTP, dTTP and dCTP) (By similarity)~~.

</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>

<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3n77|3n77]]</td></tr>

==~~About this Structure~~==

<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nudI, STM2295, yfaO ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>

[[3oga]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OGA OCA].

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oga FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oga OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3oga RCSB], [http://www.ebi.ac.uk/pdbsum/3oga PDBsum]</span></td></tr>

</table>

== Evolutionary Conservation ==

[[Image:Consurf_key_small.gif|200px|right]]

Check<jmol>

<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/og/3oga_consurf.spt"</scriptWhenChecked>

<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>

<text>to colour the structure by Evolutionary Conservation</text>

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].

__TOC__

</StructureSection>

[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]

[[Category: Anderson, W F.]]

[[Category: Anderson, W F]]

[[Category: ~~CSGID, Center for~~ Structural ~~Genomics of Infectious Diseases.~~]]

[[Category: Structural genomic]]

[[Category: Dubrovska, I.]]

[[Category: Dubrovska, I]]

[[Category: Halavaty, A S.]]

[[Category: Halavaty, A S]]

[[Category: Minasov, G.]]

[[Category: Minasov, G]]

[[Category: Peterson, S.]]

[[Category: Peterson, S]]

[[Category: Shuvalova, L.]]

[[Category: Shuvalova, L]]

[[Category: Winsor, J.]]

[[Category: Winsor, J]]

[[Category: Hydrolase]]

[[Category: Infectious disease]]

[[Category: Putative ntp pyrophosphohydrolase]]

[[Category: Salmonella enterica subsp. enterica serovar typhimurium str. lt2]]

~~[[Category: Structural genomic]]~~

[[Category: Unknown function]]

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@@ Line 1: / Line 1: @@
-{{STRUCTURE_3oga|  PDB=3oga  |  SCENE=  }}
+==1.75 Angstrom resolution crystal structure of a putative NTP pyrophosphohydrolase (yfaO) from Salmonella typhimurium LT2==
-===1.75 Angstrom resolution crystal structure of a putative NTP pyrophosphohydrolase (yfaO) from Salmonella typhimurium LT2===
+<StructureSection load='3oga' size='340' side='right' caption='[[3oga]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
+== Structural highlights ==
-==Function==
+<table><tr><td colspan='2'>[[3oga]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OGA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OGA FirstGlance]. <br>
-[[http://www.uniprot.org/uniprot/NUDI_SALTY NUDI_SALTY]] Catalyzes the hydrolysis of nucleoside triphosphates, with a preference for pyrimidine deoxynucleoside triphosphates (dUTP, dTTP and dCTP) (By similarity).
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3n77|3n77]]</td></tr>
-==About this Structure==
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nudI, STM2295, yfaO ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>
-[[3oga]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OGA OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oga FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oga OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3oga RCSB], [http://www.ebi.ac.uk/pdbsum/3oga PDBsum]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/og/3oga_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
-[[Category: Anderson, W F.]]
+[[Category: Anderson, W F]]
-[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+[[Category: Structural genomic]]
-[[Category: Dubrovska, I.]]
+[[Category: Dubrovska, I]]
-[[Category: Halavaty, A S.]]
+[[Category: Halavaty, A S]]
-[[Category: Minasov, G.]]
+[[Category: Minasov, G]]
-[[Category: Peterson, S.]]
+[[Category: Peterson, S]]
-[[Category: Shuvalova, L.]]
+[[Category: Shuvalova, L]]
-[[Category: Winsor, J.]]
+[[Category: Winsor, J]]
 [[Category: Hydrolase]]
 [[Category: Infectious disease]]
 [[Category: Putative ntp pyrophosphohydrolase]]
 [[Category: Salmonella enterica subsp. enterica serovar typhimurium str. lt2]]
-[[Category: Structural genomic]]
 [[Category: Unknown function]]