3oca: Difference between revisions

Line 1:

~~{{STRUCTURE_3oca| PDB=3oca | SCENE= }}~~

==Crystal structure of peptide deformylase from Ehrlichia chaffeensis==

===Crystal structure of peptide deformylase from Ehrlichia chaffeensis===

== Structural highlights ==

==~~Function~~==

<table><tr><td colspan='2'>[[3oca]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ehrlichia_chaffeensis Ehrlichia chaffeensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OCA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OCA FirstGlance]. <br>

[[~~http://www.uniprot.org/uniprot/Q2GI30_EHRCR Q2GI30_EHRCR~~]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[~~HAMAP-Rule:MF_00163~~]

</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>

<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CDD:29602, def, ECH_0073 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=945 Ehrlichia chaffeensis])</td></tr>

==~~About this Structure~~==

<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>

[[3oca]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ehrlichia_chaffeensis Ehrlichia chaffeensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OCA OCA].

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oca OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3oca RCSB], [http://www.ebi.ac.uk/pdbsum/3oca PDBsum]</span></td></tr>

</table>

== Evolutionary Conservation ==

[[Image:Consurf_key_small.gif|200px|right]]

Check<jmol>

<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oc/3oca_consurf.spt"</scriptWhenChecked>

<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>

<text>to colour the structure by Evolutionary Conservation</text>

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].

__TOC__

</StructureSection>

[[Category: Ehrlichia chaffeensis]]

[[Category: Peptide deformylase]]

[[Category: ~~SSGCID, Seattle~~ Structural ~~Genomics Center for Infectious Disease.]]~~

[[Category: Structural genomic]]

~~[[Category: Ehrlichia chaffeensis~~]]

[[Category: Hydrolase]]

~~[[Category: Peptide deformylase]]~~

~~[[Category: Seattle structural genomics center for infectious disease]]~~

[[Category: Ssgcid]]

~~[[Category: Structural genomic]]~~

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@@ Line 1: / Line 1: @@
-{{STRUCTURE_3oca|  PDB=3oca  |  SCENE=  }}
+==Crystal structure of peptide deformylase from Ehrlichia chaffeensis==
-===Crystal structure of peptide deformylase from Ehrlichia chaffeensis===
+<StructureSection load='3oca' size='340' side='right' caption='[[3oca]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+== Structural highlights ==
-==Function==
+<table><tr><td colspan='2'>[[3oca]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ehrlichia_chaffeensis Ehrlichia chaffeensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OCA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OCA FirstGlance]. <br>
-[[http://www.uniprot.org/uniprot/Q2GI30_EHRCR Q2GI30_EHRCR]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[HAMAP-Rule:MF_00163]
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CDD:29602, def, ECH_0073 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=945 Ehrlichia chaffeensis])</td></tr>
-==About this Structure==
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
-[[3oca]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ehrlichia_chaffeensis Ehrlichia chaffeensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OCA OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oca OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3oca RCSB], [http://www.ebi.ac.uk/pdbsum/3oca PDBsum]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oc/3oca_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Ehrlichia chaffeensis]]
 [[Category: Peptide deformylase]]
-[[Category: SSGCID, Seattle Structural Genomics Center for Infectious Disease.]]
+[[Category: Structural genomic]]
-[[Category: Ehrlichia chaffeensis]]
 [[Category: Hydrolase]]
-[[Category: Peptide deformylase]]
-[[Category: Seattle structural genomics center for infectious disease]]
 [[Category: Ssgcid]]
-[[Category: Structural genomic]]