1rkd: Difference between revisions

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[[Image:1rkd.gif|left|200px]]<br /><applet load="1rkd" size="350" color="white" frame="true" align="right" spinBox="true"
[[Image:1rkd.gif|left|200px]]
caption="1rkd, resolution 1.84&Aring;" />
 
'''E. COLI RIBOKINASE COMPLEXED WITH RIBOSE AND ADP'''<br />
{{Structure
|PDB= 1rkd |SIZE=350|CAPTION= <scene name='initialview01'>1rkd</scene>, resolution 1.84&Aring;
|SITE= <scene name='pdbsite=AB1:Residues+Making+Direct+H+Bonds+w.+Adp'>AB1</scene>, <scene name='pdbsite=AB2:Residues+Making+Water-Mediated+H+Bonds+w.+Adp'>AB2</scene>, <scene name='pdbsite=AB3:Residues+Within+Van+Der+Waals+Distance+Of+Adp'>AB3</scene>, <scene name='pdbsite=RB1:Residues+Making+Direct+H+Bonds+w.+Ribose'>RB1</scene>, <scene name='pdbsite=RB2:Residues+Making+Water-Mediated+H+Bonds+w.+Ribose'>RB2</scene> and <scene name='pdbsite=RB3:Residues+Within+Van+Der+Waals+Distance+Of+Ribose'>RB3</scene>
|LIGAND= <scene name='pdbligand=RIB:RIBOSE'>RIB</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene> and <scene name='pdbligand=ADP:ADENOSINE-5'-DIPHOSPHATE'>ADP</scene>
|ACTIVITY= [http://en.wikipedia.org/wiki/Ribokinase Ribokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.15 2.7.1.15]
|GENE= RBSK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
}}
 
'''E. COLI RIBOKINASE COMPLEXED WITH RIBOSE AND ADP'''
 


==Overview==
==Overview==
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==About this Structure==
==About this Structure==
1RKD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=RIB:'>RIB</scene>, <scene name='pdbligand=PO4:'>PO4</scene> and <scene name='pdbligand=ADP:'>ADP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Ribokinase Ribokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.15 2.7.1.15] Known structural/functional Sites: <scene name='pdbsite=AB1:Residues+Making+Direct+H+Bonds+w.+Adp'>AB1</scene>, <scene name='pdbsite=AB2:Residues+Making+Water-Mediated+H+Bonds+w.+Adp'>AB2</scene>, <scene name='pdbsite=AB3:Residues+Within+Van+Der+Waals+Distance+Of+Adp'>AB3</scene>, <scene name='pdbsite=RB1:Residues+Making+Direct+H+Bonds+w.+Ribose'>RB1</scene>, <scene name='pdbsite=RB2:Residues+Making+Water-Mediated+H+Bonds+w.+Ribose'>RB2</scene> and <scene name='pdbsite=RB3:Residues+Within+Van+Der+Waals+Distance+Of+Ribose'>RB3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RKD OCA].  
1RKD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RKD OCA].  


==Reference==
==Reference==
Structure of Escherichia coli ribokinase in complex with ribose and dinucleotide determined to 1.8 A resolution: insights into a new family of kinase structures., Sigrell JA, Cameron AD, Jones TA, Mowbray SL, Structure. 1998 Feb 15;6(2):183-93. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9519409 9519409]
Structure of Escherichia coli ribokinase in complex with ribose and dinucleotide determined to 1.8 A resolution: insights into a new family of kinase structures., Sigrell JA, Cameron AD, Jones TA, Mowbray SL, Structure. 1998 Feb 15;6(2):183-93. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9519409 9519409]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Ribokinase]]
[[Category: Ribokinase]]
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[[Category: transferase]]
[[Category: transferase]]


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