4gps

Crystal Structure of K. lactis Dxo1 (YDR370C)

spinqualitylabelsall models 4gps, resolution 2.40Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 4gps is a 1 chain structure with sequence from Kluyveromyces lactis nrrl y-1140. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: CIT Gene: KLLA0E02245g, KLLA0_E02245g (Kluyveromyces lactis NRRL Y-1140) Resources: FirstGlance, OCA, RCSB, PDBsum Function [Q6CPU0_KLULA] Ribonuclease that specifically degrades pre-mRNAs with a defective 5' end cap and is part of a pre-mRNA capping quality control. Has decapping and 5'-3' exonuclease activities. Has decapping activity toward incomplete 5' end cap mRNAs such as unmethylated 5' end-capped RNA to release GpppN and 5' end monophosphate RNA. The 5' end monophosphate RNA is then degraded by the 5'-3' exoribonuclease activity, enabling this enzyme to decap and degrade incompletely capped mRNAs. Publication Abstract from PubMed Recent studies showed that Rai1 is a crucial component of the mRNA 5'-end-capping quality-control mechanism in yeast. The yeast genome encodes a weak homolog of Rai1, Ydr370C, but little is known about this protein. Here we report the crystal structures of Ydr370C from Kluyveromyces lactis and the first biochemical and functional studies on this protein. The overall structure of Ydr370C is similar to Rai1. Ydr370C has robust decapping activity on RNAs with unmethylated caps, but it has no detectable pyrophosphohydrolase activity. Unexpectedly, Ydr370C also possesses distributive, 5'-3' exoRNase activity, and we propose the name Dxo1 for this new eukaryotic enzyme with both decapping and exonuclease activities. Studies of yeast in which both Dxo1 and Rai1 are disrupted reveal that mRNAs with incomplete caps are produced even under normal growth conditions, in sharp contrast to current understanding of the capping process. Dxo1 is a new type of eukaryotic enzyme with both decapping and 5'-3' exoribonuclease activity.,Chang JH, Jiao X, Chiba K, Oh C, Martin CE, Kiledjian M, Tong L Nat Struct Mol Biol. 2012 Sep 9. doi: 10.1038/nsmb.2381. PMID:22961381 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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