Sandbox Reserved 967: Difference between revisions

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Indeed, ribonucleotides are wrongly incorporated into DNA during DNA replication at a frequency of about 2 ribonucleotides per kb. With such frequency, these errors are by far the most abundant threat of DNA damaging. Hence, a correction is essential to the preservation of DNA integrity: the most common correction mechanism involves RNases H2 and is called Ribonucleotide Excision Repair (RER). The incorporation of ribonucleotides in DNA produce DNA•RNAfew•DNA/DNA hybrids from which the few misincorporated ribonucleotides can be removed by an RNase H2<ref> Sparks, Justin L., Hyongi Chon, Susana M. Cerritelli, Thomas A. Kunkel, Erik Johansson, Robert J. Crouch, and Peter M. Burgers. “RNase H2-Initiated Ribonucleotide Excision Repair.” Molecular Cell 47, no. 6 (September 28, 2012): 980–86. doi:10.1016/j.molcel.2012.06.035.</ref>.

This repair activity is guided by the interaction between C-terminus of RNase H2B protein and the DNA clamp PCNA. This interaction occurs through a hydrophobic conserved peptide motif called the PCNA interaction peptide PIP (PIP-box: Residues 294 to 301 MKSIDTFF of H2B protein) that interacts with a hydrophobic groove near the PCNA C-terminus. This interaction allows RNase H2 to scan DNA for misincorporated ribonucleotides which makes the Ribonucleotide Excision Repair more efficient.

This repair activity is guided by the interaction between C-terminus of RNase H2B protein and the DNA clamp PCNA. This interaction occurs through a hydrophobic conserved peptide motif called the PCNA interaction peptide PIP (PIP-box: Residues 294 to 301 MKSIDTFF of H2B protein) that interacts with a hydrophobic groove near the PCNA C-terminus. This interaction allows RNase H2 to scan DNA for misincorporated ribonucleotides which makes the Ribonucleotide Excision Repair more efficient<ref> Bubeck, Doryen, Martin A. M. Reijns, Stephen C. Graham, Katy R. Astell, E. Yvonne Jones, and Andrew P. Jackson. “PCNA Directs Type 2 RNase H Activity on DNA Replication and Repair Substrates.” Nucleic Acids Research 39, no. 9 (May 2011): 3652–66. doi:10.1093/nar/gkq980.</ref>.

Furthermore, ''in vitro'' studies have shown that RNases H2 is likely to be involved in the removal of RNA primer from Okazaki fragment produced during the synthesis of the lagging strand in DNA replication since Okazaki fragment are RNA•DNA/DNA hybrids ('''Figure 1B''').

Sandbox Reserved 967: Difference between revisions

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 Indeed, ribonucleotides are wrongly incorporated into DNA during DNA replication at a frequency of about 2 ribonucleotides per kb. With such frequency, these errors are by far the most abundant threat of DNA damaging. Hence, a correction is essential to the preservation of DNA integrity: the most common correction mechanism involves RNases H2 and is called Ribonucleotide Excision Repair (RER). The incorporation of ribonucleotides in DNA produce DNA•RNAfew•DNA/DNA hybrids from which the few misincorporated ribonucleotides can be removed by an RNase H2<ref> Sparks, Justin L., Hyongi Chon, Susana M. Cerritelli, Thomas A. Kunkel, Erik Johansson, Robert J. Crouch, and Peter M. Burgers. “RNase H2-Initiated Ribonucleotide Excision Repair.” Molecular Cell 47, no. 6 (September 28, 2012): 980–86. doi:10.1016/j.molcel.2012.06.035.</ref>.
-This repair activity is guided by the interaction between C-terminus of RNase H2B protein and the DNA clamp PCNA. This interaction occurs through a hydrophobic conserved peptide motif called the PCNA interaction peptide PIP (PIP-box: Residues 294 to 301 MKSIDTFF of H2B protein) that interacts with a hydrophobic groove near the PCNA C-terminus.  This interaction allows RNase H2 to scan DNA for misincorporated ribonucleotides which makes the Ribonucleotide Excision Repair more efficient.
+This repair activity is guided by the interaction between C-terminus of RNase H2B protein and the DNA clamp PCNA. This interaction occurs through a hydrophobic conserved peptide motif called the PCNA interaction peptide PIP (PIP-box: Residues 294 to 301 MKSIDTFF of H2B protein) that interacts with a hydrophobic groove near the PCNA C-terminus.  This interaction allows RNase H2 to scan DNA for misincorporated ribonucleotides which makes the Ribonucleotide Excision Repair more efficient<ref> Bubeck, Doryen, Martin A. M. Reijns, Stephen C. Graham, Katy R. Astell, E. Yvonne Jones, and Andrew P. Jackson. “PCNA Directs Type 2 RNase H Activity on DNA Replication and Repair Substrates.” Nucleic Acids Research 39, no. 9 (May 2011): 3652–66. doi:10.1093/nar/gkq980.</ref>.
 Furthermore, ''in vitro'' studies have shown that RNases H2 is likely to be involved in the removal of RNA primer from Okazaki fragment produced during the synthesis of the lagging strand in DNA replication since Okazaki fragment are RNA•DNA/DNA hybrids ('''Figure 1B''').