Practical Guide to Homology Modeling: Difference between revisions
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*Click ''Amino Acids''. | *Click ''Amino Acids''. | ||
*Click YES there is a known protein structure. | *Click YES there is a known protein structure. | ||
* | *Enter your PDB code, or click ''Choose File'' to upload a homology model. Click ''Next''. | ||
*Select chain A. | *Select the chain of interest. For a homology model, there will usually be only one chain, "A". | ||
*Select NO you have not prepared a Multiple Sequence Alignment (MSA) that you wish to upload. The server will generate the MSA for you. | *Select NO you have not prepared a Multiple Sequence Alignment (MSA) that you wish to upload. The server will generate the MSA for you. | ||
*Check 'Let me select the sequences'. Leave all other settings at their defaults. | *Check 'Let me select the sequences'. Leave all other settings at their defaults. | ||
*Enter a job title and your email address, then click the ''Submit'' button. The first step, gathering similar sequences, typically takes less than 5 minutes. | *Enter a job title and your email address, then click the ''Submit'' button. The first step, gathering similar sequences, typically takes less than 5 minutes. | ||
