Sandbox Reserved 1066

This Sandbox is Reserved from 02/09/2015, through 05/31/2016 for use in the course "CH462: Biochemistry 2" taught by Geoffrey C. Hoops at the Butler University. This reservation includes Sandbox Reserved 1051 through Sandbox Reserved 1080.

To get started: Click the edit this page tab at the top. Save the page after each step, then edit it again. Click the 3D button (when editing, above the wikitext box) to insert Jmol. show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page. Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc. More help: Help:Editing

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spinqualitylabelsall models Caption for this structure Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D This is a default text for your page StephanieShoults/Sandbox1. Click above on edit this page to modify. Be careful with the < and > signs. You may include any references to papers as in: the use of JSmol in Proteopedia or to the article describing Jmol to the rescue. Introduction Joey Smells Mycobacterium tuberculosis very-long-chain fatty acyl-CoA synthetase Mycobacterium tuberculosis very-long-chain fatty acyl-CoA synthetase, also known as FadD13, is unique within its class in regards to its ability to house lipid substrates longer than itself. Most FadD class proteins exist as integral membrane proteins involved in lipid transport into the cell. FadD13 is unique structurally in that it exists as a peripheral protein on the inside of the cell membrane. This feature is key in the mechanistic basis for FadD13's transport of fatty acids of length C24-C26. Mechanism Structural basis for housing lipid substrates longer than the enzyme The ability for FadD13 to transport and activate fatty acids of the maximum tested length C26, lies in it being a peripheral membrane protein. FadD13 is attached to the membrane via electrostatic interactions in the N-terminal domain. Of importance in the region is the arginine rich lid-loop which serves to block the transport of fatty acids into the enzyme. Once the lid-loop is opened, fatty acids may be pulled from the membrane into a hydrophobic tunnel, which is the main structural component by which fatty acids are transported from the membrane into the cell. Negatively charged residues at the active site of FadD13 are the driving factor in the attraction of the fatty acid from the membrane through the hydrophobic tunnel of the enzyme. Structure General overview This is the overall structure of FadD13 FadD13 is composed of 503 amino acid residues divided into three main regions: The N-terminal domain (residues 1-395) and C-terminal domain (residues 402-503) which are connected via a flexible linker (residues 396-401). Electrostatics The electrostatics of FadD13 as seen in (figure...) illustrate the hydrophobic and positively charged regions that compose this protein. Experimental results from (Paper) revealed that the peripheral FadD13 attached to the membrane via positively charges interacting with the negatively charged cell membrane (image) located on the top portion of the N-terminal region. Of key importance in this N-terminal domain region attached to the membrane is an area of notable arginine rich residues, known as the arginine rich lid-loop. Arginine Rich Lid-loop The arginine rich lid loop as see in (figure...) functions to block entry of fatty acids into the hydrophobic tunnel of FadD13. Hydrophobic Tunnel The hydrophobic tunnel of FadD13 is essential to the transport of very long fatty acids from the membrane into the cell. Active Site The active site on FadD13 is composed of two conserved regions, one of which serves as the binding site for ATP and the other for CoA. Disease Mycobacterium tuberculosis is the causative agent involved in the disease tuberculosis. Relevance This is a sample scene created with SAT to color by Group, and another to make a transparent representation of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.