Practical Guide to Homology Modeling: Difference between revisions
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Below is a table listing sequence ranges and percentages of sequence identity. Clicking on '''<nowiki>[Show]</nowiki>''' gives you a report with a link to download the homology model. | Below is a table listing sequence ranges and percentages of sequence identity. Clicking on '''<nowiki>[Show]</nowiki>''' gives you a report with a link to download the homology model. | ||
* SWISSMODEL: use the '''<nowiki>[ download ]</nowiki>''' link. | * SWISSMODEL: use the '''<nowiki>[ download ]</nowiki>''' link. | ||
* <font color='red'>Important for MODBASE:</font> | * <font color='red'>Important for MODBASE: Click on MODBASE</font> (not <nowiki>[ download ]</nowiki> which will give you a file not readable by FirstGlance). At the ModBase page, open the menu under <font color='green'>Perform action on this model</font> and select ''Coordinates''. This will download a PDB file readable by FirstGlance. | ||
Notice the section at the bottom of the page ''Remodel this protein''. This is a good option if you don't find a satisfactory model. | Notice the section at the bottom of the page ''Remodel this protein''. This is a good option if you don't find a satisfactory model. | ||
