User:Michael Roberts/BIOL115 Myo: Difference between revisions
From Proteopedia
Jump to navigationJump to search
No edit summary |
mNo edit summary |
||
| Line 19: | Line 19: | ||
'''SECONDARY STRUCTURE''': This next view simplifies things, and just shows a <scene name='User:Michael_Roberts/BIOL115_Myo/Secondary_structure/9'>cartoon representation </scene>of the secondary structure of the protein. | '''SECONDARY STRUCTURE''': This next view simplifies things, and just shows a <scene name='User:Michael_Roberts/BIOL115_Myo/Secondary_structure/9'>cartoon representation </scene>of the secondary structure of the protein. | ||
You see how the <scene name='User:Michael_Roberts/BIOL115_Myo/Hbonds/1'>hydrogen bonds</scene> (yellow) that maintain the main secondary structure of the protein are arranged in this next view. | You see how the <scene name='User:Michael_Roberts/BIOL115_Myo/Hbonds/1'>hydrogen bonds</scene> (yellow) that maintain the main secondary structure of the protein are arranged in this next view. | ||
Some amino acids have specific effects on secondary structure. This next view shows the locations of the <scene name='User:Michael_Roberts/BIOL115_Myo/Secondary_structure/11'>PROLINE</scene> residues in myoglobin. You can see that they all fall at the end of a stretch of helix. This is | Some amino acids have specific effects on secondary structure. This next view shows the locations of the <scene name='User:Michael_Roberts/BIOL115_Myo/Secondary_structure/11'>PROLINE</scene> residues in myoglobin. You can see that they all fall at the end of a stretch of helix. This is because their large, cyclic side chains do not fit within the straight run of α-helix. | ||
| Line 42: | Line 42: | ||
'''PROXIMAL AND DISTAL HISTIDINES''': The iron atom sits either side of the side chains of two <scene name='User:Michael_Roberts/BIOL115_Myo/Heme/4'>histidine residues</scene>. | '''PROXIMAL AND DISTAL HISTIDINES''': The iron atom sits either side of the side chains of two <scene name='User:Michael_Roberts/BIOL115_Myo/Heme/4'>histidine residues</scene>. | ||
One of these (coloured cyan) is attached to the iron atom, and is known as the ''proximal'' histidine. The other (green) is called the ''distal'' histidine. | One of these (coloured cyan) is attached to the iron atom, and is known as the ''proximal'' histidine. The other (green) is called the ''distal'' histidine. | ||
Note how the iron is pulled out slightly to one side of the plane of the heam group as a result of it's co-ordination with the side chain of the proximal histidine. | |||
'''OXYGEN''': | '''OXYGEN''': | ||
The space between the iron and the distal histidine is where the <scene name='User:Michael_Roberts/BIOL115_Myo/Heme/6'>oxygen</scene> (pink) binds. | The space between the iron and the distal histidine is where the <scene name='User:Michael_Roberts/BIOL115_Myo/Heme/6'>oxygen</scene> (pink) binds. | ||
Note the angled orientation of the oxygen relative to the plane of the heam. The natural binding of oxygen to heam in solution would be the O2 molecule perpendicular to the plane. In myoglobin (and haemoglobin) the presence of the distal His forces to O2 to one side, reducing the affinity of the heam-O2 binding, thus allowing release of oxygen when pO2 is low. The same effect of the distal His also reduces the affinity of heam for carbon monoxide. | |||
</StructureSection> | </StructureSection> | ||
