2yxu: Difference between revisions

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New page: left|200px<br /><applet load="2yxu" size="350" color="white" frame="true" align="right" spinBox="true" caption="2yxu, resolution 2.2Å" /> '''Human Pyridoxal Kinas...
 
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[[Image:2yxu.jpg|left|200px]]<br /><applet load="2yxu" size="350" color="white" frame="true" align="right" spinBox="true"
[[Image:2yxu.jpg|left|200px]]
caption="2yxu, resolution 2.2&Aring;" />
 
'''Human Pyridoxal Kinase'''<br />
{{Structure
|PDB= 2yxu |SIZE=350|CAPTION= <scene name='initialview01'>2yxu</scene>, resolution 2.2&Aring;
|SITE= <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+A+1404'>AC1</scene>, <scene name='pdbsite=AC2:Na+Binding+Site+For+Residue+A+1406'>AC2</scene>, <scene name='pdbsite=AC3:Mg+Binding+Site+For+Residue+B+2404'>AC3</scene>, <scene name='pdbsite=AC4:Na+Binding+Site+For+Residue+B+2406'>AC4</scene>, <scene name='pdbsite=AC5:Po4+Binding+Site+For+Residue+A+1501'>AC5</scene>, <scene name='pdbsite=AC6:Po4+Binding+Site+For+Residue+B+1517'>AC6</scene>, <scene name='pdbsite=AC7:Po4+Binding+Site+For+Residue+B+1527'>AC7</scene>, <scene name='pdbsite=AC8:Atp+Binding+Site+For+Residue+A+1410'>AC8</scene>, <scene name='pdbsite=AC9:Atp+Binding+Site+For+Residue+B+2410'>AC9</scene>, <scene name='pdbsite=BC1:Mpd+Binding+Site+For+Residue+A+1011'>BC1</scene>, <scene name='pdbsite=BC2:Mpd+Binding+Site+For+Residue+A+1013'>BC2</scene>, <scene name='pdbsite=BC3:Mpd+Binding+Site+For+Residue+B+1015'>BC3</scene>, <scene name='pdbsite=BC4:Mpd+Binding+Site+For+Residue+B+1019'>BC4</scene>, <scene name='pdbsite=BC5:Mpd+Binding+Site+For+Residue+B+1021'>BC5</scene>, <scene name='pdbsite=BC6:Mpd+Binding+Site+For+Residue+B+1023'>BC6</scene>, <scene name='pdbsite=BC7:Mpd+Binding+Site+For+Residue+B+1025'>BC7</scene>, <scene name='pdbsite=BC8:Mpd+Binding+Site+For+Residue+B+1029'>BC8</scene>, <scene name='pdbsite=BC9:Mpd+Binding+Site+For+Residue+B+1031'>BC9</scene>, <scene name='pdbsite=CC1:Mpd+Binding+Site+For+Residue+A+1037'>CC1</scene>, <scene name='pdbsite=CC2:Mpd+Binding+Site+For+Residue+B+1039'>CC2</scene> and <scene name='pdbsite=CC3:Mpd+Binding+Site+For+Residue+B+1041'>CC3</scene>
|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ATP:ADENOSINE-5'-TRIPHOSPHATE'>ATP</scene> and <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>
|ACTIVITY= [http://en.wikipedia.org/wiki/Pyridoxal_kinase Pyridoxal kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.35 2.7.1.35]
|GENE= PDXK, PKH, PNK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
}}
 
'''Human Pyridoxal Kinase'''
 


==Overview==
==Overview==
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==About this Structure==
==About this Structure==
2YXU is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=NA:'>NA</scene>, <scene name='pdbligand=PO4:'>PO4</scene>, <scene name='pdbligand=ATP:'>ATP</scene> and <scene name='pdbligand=MPD:'>MPD</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Pyridoxal_kinase Pyridoxal kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.35 2.7.1.35] Known structural/functional Sites: <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+A+1404'>AC1</scene>, <scene name='pdbsite=AC2:Na+Binding+Site+For+Residue+A+1406'>AC2</scene>, <scene name='pdbsite=AC3:Mg+Binding+Site+For+Residue+B+2404'>AC3</scene>, <scene name='pdbsite=AC4:Na+Binding+Site+For+Residue+B+2406'>AC4</scene>, <scene name='pdbsite=AC5:Po4+Binding+Site+For+Residue+A+1501'>AC5</scene>, <scene name='pdbsite=AC6:Po4+Binding+Site+For+Residue+B+1517'>AC6</scene>, <scene name='pdbsite=AC7:Po4+Binding+Site+For+Residue+B+1527'>AC7</scene>, <scene name='pdbsite=AC8:Atp+Binding+Site+For+Residue+A+1410'>AC8</scene>, <scene name='pdbsite=AC9:Atp+Binding+Site+For+Residue+B+2410'>AC9</scene>, <scene name='pdbsite=BC1:Mpd+Binding+Site+For+Residue+A+1011'>BC1</scene>, <scene name='pdbsite=BC2:Mpd+Binding+Site+For+Residue+A+1013'>BC2</scene>, <scene name='pdbsite=BC3:Mpd+Binding+Site+For+Residue+B+1015'>BC3</scene>, <scene name='pdbsite=BC4:Mpd+Binding+Site+For+Residue+B+1019'>BC4</scene>, <scene name='pdbsite=BC5:Mpd+Binding+Site+For+Residue+B+1021'>BC5</scene>, <scene name='pdbsite=BC6:Mpd+Binding+Site+For+Residue+B+1023'>BC6</scene>, <scene name='pdbsite=BC7:Mpd+Binding+Site+For+Residue+B+1025'>BC7</scene>, <scene name='pdbsite=BC8:Mpd+Binding+Site+For+Residue+B+1029'>BC8</scene>, <scene name='pdbsite=BC9:Mpd+Binding+Site+For+Residue+B+1031'>BC9</scene>, <scene name='pdbsite=CC1:Mpd+Binding+Site+For+Residue+A+1037'>CC1</scene>, <scene name='pdbsite=CC2:Mpd+Binding+Site+For+Residue+B+1039'>CC2</scene> and <scene name='pdbsite=CC3:Mpd+Binding+Site+For+Residue+B+1041'>CC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXU OCA].  
2YXU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXU OCA].  


==Reference==
==Reference==
Crystal Structure of human pyridoxal kinase: structural basis of M(+) and M(2+) activation., Musayev FN, di Salvo ML, Ko TP, Gandhi AK, Goswami A, Schirch V, Safo MK, Protein Sci. 2007 Oct;16(10):2184-94. Epub 2007 Aug 31. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17766369 17766369]
Crystal Structure of human pyridoxal kinase: structural basis of M(+) and M(2+) activation., Musayev FN, di Salvo ML, Ko TP, Gandhi AK, Goswami A, Schirch V, Safo MK, Protein Sci. 2007 Oct;16(10):2184-94. Epub 2007 Aug 31. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17766369 17766369]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Pyridoxal kinase]]
[[Category: Pyridoxal kinase]]
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[[Category: transferase]]
[[Category: transferase]]


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