User:Shai Biran/ SAT: Difference between revisions

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New page: ==Your Heading Here (maybe something like 'Structure')== <StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''> This is a default text for you...
 
Shai Biran (talk | contribs)
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==Your Heading Here (maybe something like 'Structure')==
== Example page for Green fluorescent protein ("GFP") ==
<StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''>
<StructureSection load='1ema' size='300' frame='true'  side='right' caption='GFP ([[1ema]])' scene=''>
This is a default text for your page '''Shai Biran/ SAT'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
[[Image:1ema.gif|thumb|left|450px|Green fluorescent protein (1ema)]]
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.


== Function ==
Green fluorescent protein (GFP), originally isolated from the jellyfish Aequorea victoria (PDB entry 1ema), fluorsceses green (509nm) when exposed to blue light (395nm and 475nm). It is one of the most important proteins used in biological research because it can be used to tag otherwise invisible gene products of interest and thus observe their existence, location and movement.


== Disease ==
Exploring the Structure
GFP is a beta barrel protein with 11 beta sheets. It is a 26.9kDa protein made up of 238 amino acids. The chromophore, responsible for the fluorescent properties of the protein, is buried inside the beta barrel as part of the central alpha helix passing through the barrel. The chromophore forms via spontaneous cyclization and oxidation of three residues in the central alpha helix: -Thr65 (or Ser65)-Tyr66-Gly67. This cyclization and oxidation creates the chromophore's five-membered ring via a new bond between the threonine and the glycine residues.<ref>PMID:8703075</ref>


== Relevance ==
</StructureSection>


== Structural highlights ==
==References==
<references/>


This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
==Quiz==
 
<quiz display=sample>
</StructureSection>
{How many alpha helics are in this structure?}
== References ==
- One
<references/>
- None
+ Eleven
- Twelve
</quiz>
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