User:Wade Cook/Sandbox 1: Difference between revisions

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[[Image:Active_site_(new).png]]
[[Image:Active_site_(new).png]]


In the figure above, [A] shows the amino acid residues located within the active site of eukaryotic topoisomerase 1B. [B] shows the amino acid residues located within the active site of viral topoisomerase 1B. Both active sites contain similar residues and are highly conserved among the different species. Researchers have proven that an asparagine residue can replace the histidine residue in the active site of both eukaryotic and viral topoisomerase, and the enzyme will still undergo the same cleavage mechanism. This suggests that the same cleavage and reliagation mechanisms are the same in all topoisomerase 1B’s (Baker et al, 2009).Type IB topoisomerase is a key target for research against the spread of smallpox because it is integral for the viruses replication process. The replication of smallpox is complicated since it doesn’t hijack the host’s genetic machinery to reproduce, this makes the disease highly virulent, and hard to specifically target for elimination by antiviral drugs (Berwald, 2004).
In the figure above, [A] shows the amino acid residues located within the active site of eukaryotic topoisomerase 1B. [B] shows the amino acid residues located within the active site of viral topoisomerase 1B. Both active sites contain similar residues and are highly conserved among the different species. Researchers have proven that an asparagine residue can replace the histidine residue in the active site of the viral topoisomerase, and the enzyme will still undergo the same cleavage mechanism. This suggests that the same cleavage and reliagation mechanisms are the same in all topoisomerase 1B’s <ref name="Baker" />.Type IB topoisomerase is a key target for research against the spread of smallpox because it is integral for the viruses replication process. The replication of smallpox is complicated since it doesn’t hijack the host’s genetic machinery to reproduce, this makes the disease highly virulent, and hard to specifically target for elimination by antiviral drugs <ref name="Baker" />.


== Relevance ==
== Relevance ==


Smallpox is a highly contagious disease, which accounts for its massive epidemics killing millions around the world. Although smallpox was declared eradicated by the WHO in 1980, there has been recent public concern about the use of smallpox as a biological weapon. This represents a serious threat to civilian populations, which stresses the importance of understanding molecular dynamics, mechanism and, risk, in order to prevent and control it in case of an outbreak.  
Smallpox is a highly contagious disease, which accounts for the massive epidemics that kills millions of people around the world. Although smallpox was declared eradicated by the WHO in 1980, there has been recent public concern about the use of smallpox as a biological weapon. This represents a serious threat to civilian populations, which stresses the importance of understanding molecular dynamics, mechanism and, risk, in order to prevent and control it in case of an outbreak <ref name="Smith" />.  


This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.


</StructureSection>
</StructureSection>
== References ==
== References ==
Baker, Nicole M., Rakhi Rajan, and Alfonso Mondragón. “Structural Studies of Type I Topoisomerases.” Nucleic Acids Research 37.3 (2009): 693–701. PMC. Web. 16 Nov. 2015.
Berwald, Juli. "Variola Virus." Encyclopedia of Espionage, Intelligence, and Security. 2004.Encyclopedia.com. 28 Oct. 2015 <http://www.encyclopedia.com>.
Minkah, Nana et al. “Variola Virus Topoisomerase: DNA Cleavage Specificity and Distribution of Sites in Poxvirus Genomes.” Virology 365.1 (2007): 60–69.PMC. Web. 16 Nov. 2015.
"PENN Medicine News: Penn Researchers Determine Structure of Smallpox Virus Protein Bound to DNA." PENN Medicine News: Penn Researchers Determine Structure of Smallpox Virus Protein Bound to DNA. PENN Medicine, 4 Aug. 2006. Web. 28 Oct. 2015. <http://www.uphs.upenn.edu/news/News_Releases/aug06/smlpxenz.htm>.
Perry, Kay, Young Hwang, Frederic D. Bushman, and Gregory D. Van Duyne. "Insights from the Structure of a Smallpox Virus Topoisomerase-DNA Transition State Mimic." Structure (London, England : 1993). U.S. National Library of Medicine, n.d. Web. 28 Oct. 2015. <http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2822398/>.
Shubhash, and Parija. "Poxviruses." Textbook of Microbiology and Immunity. Ed. Chandra. India: Elsevior, 2009. 484. Print.
“Smallpox.” Center for Disease Control and Prevention. CDC, n.d. Web. 28 Oct. 2015. <http://www.bt.cdc.gov/agent/smallpox/index.asp>.
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