Student Projects for UMass Chemistry 423 Spring 2015: Difference between revisions
From Proteopedia
Jump to navigationJump to search
No edit summary |
|||
| Line 54: | Line 54: | ||
:This will include the published paper that describes your structure (the reference associated with your pdb code). You will get much of your information about specific interactions to look for and highlight in the structure from this reference (which is much easier than trying to find these on your own with no guidance!). | :This will include the published paper that describes your structure (the reference associated with your pdb code). You will get much of your information about specific interactions to look for and highlight in the structure from this reference (which is much easier than trying to find these on your own with no guidance!). | ||
==Help== | ==Help== | ||
| Line 130: | Line 106: | ||
If you are having trouble labeling individual amino acids residues, load your molecule, go to "selections," input the amino acid, residue number, and an atom only contained once in the amino acid (must typically nitrogen), and replace your selection. Then go to "labels" and chose which label you want. This should give you a single label. | If you are having trouble labeling individual amino acids residues, load your molecule, go to "selections," input the amino acid, residue number, and an atom only contained once in the amino acid (must typically nitrogen), and replace your selection. Then go to "labels" and chose which label you want. This should give you a single label. | ||
== Example == | === Example === | ||
This is a complex between a macromolecule and its ligand (but this ligand is not a drug) that illlustrates the use of green scenes: | This is a complex between a macromolecule and its ligand (but this ligand is not a drug) that illlustrates the use of green scenes: | ||
| Line 158: | Line 134: | ||
'''References''' | '''References''' | ||
<references/> | <references/> | ||
==Teams, Topics, and Links== | |||
1. Emily Friis, Md Shafiul Hossain, Emily Hutchinson, Hieu (Vinny) La, John MacMunn, Kevin Purcell: '''''Protein kinase C related kinase/Tofacitinib (prostrate and ovarian cancer)''''' - [[Sandbox Reserved 425|4OTI]] | |||
2. Arash Manafirad, Mahdiyeh Yazdani, Allison Coutu, Jack Caudwell, Christopher Borcoche, Thanh Nguyen, Sonny Nguyen.,'''''Tranthyretin/genistein complex''''' - [[Sandbox Reserved 426| 3kgt]] | |||
3. Jacob Kellett, Leah Caffrey, Patrick Harney, Bridget Kilkenny, Brandon Kittredge, Matthew Long topic name - Opioid Receptor [[Sandbox Reserved 427|4djh]] | |||
4. Michael Bresnahan, Matthew Caissy, Jonathan Dullea, James Eyke, Adlina Hasni, Xuanting Wang: '''Dengue virus methyltransferase bound to a SAM-based inhibitor''' - [[Sandbox Reserved 428|3p8z]] | |||
5. Nick Barberio, Nicole Garvin, Megan Greiner, Peter Kelly, Charit Tippareddy, John Vetrano: LRRK2/kinase inhibitors: Parkinsons (4py1) - [[Sandbox Reserved 429|4py1]] '''Excellent job!''' | |||
6. Ashley Andrews, Steven Ayotte, Lee Johnson, Deanna Oliveira, Seo Yeon Orite, Mark Allen Pagkaliwangan: '''Pim-1 kinase/aminooxadiazoleindole inhibitor(cancer) (4ty1)''' - [[Sandbox Reserved 430|4ty1]] | |||
7. Colin Hannahan, Megi Marina, Cassandra Martin, Eric Rice, Benjamin Ryter, Matthew Tuttle '''MTH1/crozotinib (cancer)''' - [[Sandbox Reserved 431|4c9x]] | |||
8. Jeremy Gilbride, Ross Furash, Michael Grunwald, Lauren Okamoto, Laura Ornes, Randy Phan '''Sulfonylpiperidines/Thymidylate Kinase Inhibitor''' - Antibacterial | [[Sandbox Reserved 432|4hld]] | |||
9. Elvan Cavac, Nerses Haroutunian, Nick Hoffman-Klaucke, Sarah Johnson, Christina Lincoln, Bach Pham, Zachary Plourde : '''''GSK-3 beta complexes with inhibitors''''' [[Sandbox Reserved 433|1q3d]] | |||
10. Brian Cain, James Conner, William Doherty, Kyle Missaggia, Anya Novikova, Soo Lim Eunice Park: '''Estrogen receptor beta/genistein complex''' - [[Sandbox Reserved 434|1x7j]] | |||
