3dou: Difference between revisions

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== Structural highlights ==

<table><tr><td colspan='2'>[[3dou]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermoplasma_volcanium Thermoplasma volcanium~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DOU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DOU FirstGlance]. <br>

<table><tr><td colspan='2'>[[3dou]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_51530 Atcc 51530]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DOU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DOU FirstGlance]. <br>

</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>

<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>

<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rrmJ, TV0292, TVG0303954 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=50339 ~~Thermoplasma volcanium~~])</td></tr>

<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rrmJ, TV0292, TVG0303954 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=50339 ATCC 51530])</td></tr>

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dou FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dou OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dou RCSB], [http://www.ebi.ac.uk/pdbsum/3dou PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3dou TOPSAN]</span></td></tr>

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dou FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dou OCA], [http://pdbe.org/3dou PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dou RCSB], [http://www.ebi.ac.uk/pdbsum/3dou PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3dou TOPSAN]</span></td></tr>

</table>

== Function ==

[[http://www.uniprot.org/uniprot/~~RRMJ_THEVO RRMJ_THEVO~~]] Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.

[[http://www.uniprot.org/uniprot/RLME_THEVO RLME_THEVO]] Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.[HAMAP-Rule:MF_01547]

== Evolutionary Conservation ==

[[Image:Consurf_key_small.gif|200px|right]]

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<text>to colour the structure by Evolutionary Conservation</text>

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dou ConSurf].

__TOC__

</StructureSection>

[[Category: ~~Thermoplasma volcanium~~]]

[[Category: Atcc 51530]]

[[Category: Almo, S C]]

[[Category: Bain, K]]

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@@ Line 2: / Line 2: @@
 <StructureSection load='3dou' size='340' side='right' caption='[[3dou]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3dou]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_volcanium Thermoplasma volcanium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DOU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DOU FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3dou]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_51530 Atcc 51530]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DOU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DOU FirstGlance]. <br>
 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
 <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rrmJ, TV0292, TVG0303954 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=50339 Thermoplasma volcanium])</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rrmJ, TV0292, TVG0303954 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=50339 ATCC 51530])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dou FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dou OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dou RCSB], [http://www.ebi.ac.uk/pdbsum/3dou PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3dou TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dou FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dou OCA], [http://pdbe.org/3dou PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dou RCSB], [http://www.ebi.ac.uk/pdbsum/3dou PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3dou TOPSAN]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/RRMJ_THEVO RRMJ_THEVO]] Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
+[[http://www.uniprot.org/uniprot/RLME_THEVO RLME_THEVO]] Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.[HAMAP-Rule:MF_01547]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 18: / Line 18: @@
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dou ConSurf].
 <div style="clear:both"></div>
 __TOC__
 </StructureSection>
-[[Category: Thermoplasma volcanium]]
+[[Category: Atcc 51530]]
 [[Category: Almo, S C]]
 [[Category: Bain, K]]