2vum: Difference between revisions

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<StructureSection load='2vum' size='340' side='right' caption='[[2vum]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
<StructureSection load='2vum' size='340' side='right' caption='[[2vum]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2vum]] is a 16 chain structure with sequence from [http://en.wikipedia.org/wiki/Amanita_phalloides Amanita phalloides] and [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VUM FirstGlance]. <br>
<table><tr><td colspan='2'>[[2vum]] is a 16 chain structure with sequence from [http://en.wikipedia.org/wiki/Amaph Amaph] and [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VUM FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene>, <scene name='pdbligand=CSX:S-OXY+CYSTEINE'>CSX</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene>, <scene name='pdbligand=ILX:4,5-DIHYDROXYISOLEUCINE'>ILX</scene>, <scene name='pdbligand=TRX:6-HYDROXYTRYPTOPHAN'>TRX</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene>, <scene name='pdbligand=CSX:S-OXY+CYSTEINE'>CSX</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene>, <scene name='pdbligand=ILX:4,5-DIHYDROXYISOLEUCINE'>ILX</scene>, <scene name='pdbligand=TRX:6-HYDROXYTRYPTOPHAN'>TRX</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1k83|1k83]], [[3cqz|3cqz]], [[1twc|1twc]], [[1i6h|1i6h]], [[1y1v|1y1v]], [[1y77|1y77]], [[1y1y|1y1y]], [[1wcm|1wcm]], [[1r9s|1r9s]], [[1twg|1twg]], [[1sfo|1sfo]], [[1i50|1i50]], [[1twa|1twa]], [[1r5u|1r5u]], [[1nik|1nik]], [[1twh|1twh]], [[1r9t|1r9t]], [[2ja7|2ja7]], [[2ja6|2ja6]], [[1a1d|1a1d]], [[1dzf|1dzf]], [[1y14|1y14]], [[1y1w|1y1w]], [[1nt9|1nt9]], [[2b63|2b63]], [[1twf|1twf]], [[1i3q|1i3q]], [[1pqv|1pqv]], [[2b8k|2b8k]], [[2ja8|2ja8]], [[2ja5|2ja5]]</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1k83|1k83]], [[3cqz|3cqz]], [[1twc|1twc]], [[1i6h|1i6h]], [[1y1v|1y1v]], [[1y77|1y77]], [[1y1y|1y1y]], [[1wcm|1wcm]], [[1r9s|1r9s]], [[1twg|1twg]], [[1sfo|1sfo]], [[1i50|1i50]], [[1twa|1twa]], [[1r5u|1r5u]], [[1nik|1nik]], [[1twh|1twh]], [[1r9t|1r9t]], [[2ja7|2ja7]], [[2ja6|2ja6]], [[1a1d|1a1d]], [[1dzf|1dzf]], [[1y14|1y14]], [[1y1w|1y1w]], [[1nt9|1nt9]], [[2b63|2b63]], [[1twf|1twf]], [[1i3q|1i3q]], [[1pqv|1pqv]], [[2b8k|2b8k]], [[2ja8|2ja8]], [[2ja5|2ja5]]</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vum FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vum OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vum RCSB], [http://www.ebi.ac.uk/pdbsum/2vum PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vum FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vum OCA], [http://pdbe.org/2vum PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vum RCSB], [http://www.ebi.ac.uk/pdbsum/2vum PDBsum]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vum ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 2vum" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Amanita phalloides]]
[[Category: Amaph]]
[[Category: DNA-directed RNA polymerase]]
[[Category: DNA-directed RNA polymerase]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
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