User:Daniel Schemenauer/Sandbox 1: Difference between revisions
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== Introduction == | == Introduction == | ||
G-coupled protein receptors [https://en.wikipedia.org/wiki/G_protein–coupled_receptor GPCR] are trans-membrane proteins that are integral to cell signaling. The human genome encodes for approximately 750 GPCRS, 350 of which are known to respond to extracellular ligands.<ref name="GPCRRep">PMID: 12679517 </ref>. GPCRs are divided into four major classes based on sequence similarity and transduction mechanism; Class A,B,C, and F.<ref name="MSGPCR">PMID:23407534</ref>. Metabotropic Glutamate Receptor 5 (mGlu<sub>5</sub>) is a class C GPCR that is involved in the G<sub>q</sub> pathway <ref name="CCGPCR">PMID:12782243</ref>. mGlu<sub>5</sub>is highly expressed in neuronal and glial cells in the central nervous system, where glutamate serves as the major neurotransmitter. When glutamate binds to the extracellular domain of mGlu<sub>5</sub>, consisting of the Venus Fly Trap <ref name="Primary">PMID: 25042998 </ref>, a conformational change through the tram-membrane domains activates the coupled G-protein. This G-protein disassociates and the alpha subunit activates [https://en.wikipedia.org/wiki/Phospholipase_C Phospholipase C] which has the final outcome of increased neuronal activity<ref name="MSGPCR">PMID:23407534</ref>. | G-coupled protein receptors [https://en.wikipedia.org/wiki/G_protein–coupled_receptor GPCR] are trans-membrane proteins that are integral to cell signaling. The human genome encodes for approximately 750 GPCRS, 350 of which are known to respond to extracellular ligands.<ref name="GPCRRep">PMID: 12679517 </ref>. GPCRs are divided into four major classes based on sequence similarity and transduction mechanism; Class A,B,C, and F.<ref name="MSGPCR">PMID:23407534</ref>. Metabotropic Glutamate Receptor 5 (mGlu<sub>5</sub>) is a class C GPCR that is involved in the G<sub>q</sub> pathway <ref name="CCGPCR">PMID:12782243</ref>. mGlu<sub>5</sub>is highly expressed in neuronal and glial cells in the central nervous system, where glutamate serves as the major neurotransmitter. When glutamate binds to the extracellular domain of mGlu<sub>5</sub>, consisting of the Venus Fly Trap <ref name="Primary">PMID: 25042998 </ref>, a conformational change through the tram-membrane domains activates the coupled G-protein. This G-protein disassociates and the alpha subunit activates [https://en.wikipedia.org/wiki/Phospholipase_C Phospholipase C] which has the final outcome of increased neuronal activity<ref name="MSGPCR">PMID:23407534</ref>. | ||
== Structure == | == Structure == | ||
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===Role in Diseases=== | ===Role in Diseases=== | ||
mGlu<sub>5</sub> is located mainly post-synaptically and is in high abundance in the [https://en.wikipedia.org/wiki/Nucleus_accumbens nucleus accumbens], [https://en.wikipedia.org/wiki/Caudate_nucleus caudate nucleus], [https://en.wikipedia.org/wiki/Striatum striatum], [https://en.wikipedia.org/wiki/Hippocampus hippocampus] and [https://en.wikipedia.org/wiki/Cerebellum cerebellar cortex] <ref name="Local">PMID: 8295733 </ref>.These areas of the brain are highly involved in cognition, motivation and emotion, essential neural functions for everyday life. Diseases and other mental deficiencies arise from either an over activation of the GPCR, which over activates its coupled signaling pathway, or from under activation of both. Negative allosteric modulators (NAMs) work to decrease protein activity and are being studied as treatments for [https://en.wikipedia.org/wiki/Fragile_X_syndrome fragile X-syndrome], depression, anxiety and [https://en.wikipedia.org/wiki/Dyskinesia dyskinesia]. Conversely Positive allosteric modulators work to increase protein activity and are being studied for the treatment of schizophrenia and cognitive disorders<ref name="Diseases">PMID: 24237242</ref>. | mGlu<sub>5</sub> is located mainly post-synaptically and is in high abundance in the [https://en.wikipedia.org/wiki/Nucleus_accumbens nucleus accumbens], [https://en.wikipedia.org/wiki/Caudate_nucleus caudate nucleus], [https://en.wikipedia.org/wiki/Striatum striatum], [https://en.wikipedia.org/wiki/Hippocampus hippocampus] and [https://en.wikipedia.org/wiki/Cerebellum cerebellar cortex] <ref name="Local">PMID: 8295733 </ref>.These areas of the brain are highly involved in cognition, motivation and emotion, essential neural functions for everyday life. Diseases and other mental deficiencies arise from either an over activation of the GPCR, which over activates its coupled signaling pathway, or from under activation of both. Negative allosteric modulators (NAMs) work to decrease protein activity and are being studied as treatments for [https://en.wikipedia.org/wiki/Fragile_X_syndrome fragile X-syndrome], depression, anxiety and [https://en.wikipedia.org/wiki/Dyskinesia dyskinesia]. Conversely Positive allosteric modulators work to increase protein activity and are being studied for the treatment of schizophrenia and cognitive disorders<ref name="Diseases">PMID: 24237242</ref>. | ||
===Interactions with a Negative Allosteric Modulator=== | ===Interactions with a Negative Allosteric Modulator=== | ||
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The bicyclic ring system of the drug is surrounded by a pocket of mainly hydrophobic residues including Val 806, Met 802, Phe 788, Trp 785, Leu 744, Ile 651, Pro 655 and Asn 747<ref name="Primary">PMID: 25042998 </ref> (Figure 1). The carbamate tail of mavoglurant forms a hydrogen bond through its carbonyl oxygen to the amide side-chain of Asparagine 747 of TM4 (Figure 2). A hydroxyl group similarly forms hydrogen bonds to the protein, specifically to two serine residues (S805 and S809) of TM7 which form a hydrogen bonding network to other residues through their main chain atoms and a coordinated water molecule (omitted for clarity) (Figure 3). The interactions between Mavoglurant andmGlu<sub>5</sub> involved TM helices that were not previously stabilized by any strong interactions, introducing a new level of stability that favors the inactive conformation of the protein and hence decrease activity<ref name="Primary">PMID: 25042998 </ref>. | The bicyclic ring system of the drug is surrounded by a pocket of mainly hydrophobic residues including Val 806, Met 802, Phe 788, Trp 785, Leu 744, Ile 651, Pro 655 and Asn 747<ref name="Primary">PMID: 25042998 </ref> (Figure 1). The carbamate tail of mavoglurant forms a hydrogen bond through its carbonyl oxygen to the amide side-chain of Asparagine 747 of TM4 (Figure 2). A hydroxyl group similarly forms hydrogen bonds to the protein, specifically to two serine residues (S805 and S809) of TM7 which form a hydrogen bonding network to other residues through their main chain atoms and a coordinated water molecule (omitted for clarity) (Figure 3). The interactions between Mavoglurant andmGlu<sub>5</sub> involved TM helices that were not previously stabilized by any strong interactions, introducing a new level of stability that favors the inactive conformation of the protein and hence decrease activity<ref name="Primary">PMID: 25042998 </ref>. | ||
[[Image:Mav_Hydrophobic_pocket.png |300 px|left|thumb|Figure 1.Hydrophobic Pocket Surrounding Mavoglurant]] | [[Image:Mav_Hydrophobic_pocket.png |300 px|left|thumb|Figure 1.Hydrophobic Pocket Surrounding Mavoglurant]] | ||
[[Image:Mav_HB_1.1.png|300 px| | [[Image:Mav_HB_1.1.png|300 px|right|thumb|Figure 2.Hydrogen Bonding interactions between protein and Mavoglurant]] | ||
[[Image:Mav_HB_2.png|300 px|left|thumb|Figure 3. Further Hydrogen Bonding between protein and Mavoglurant]] | [[Image:Mav_HB_2.png|300 px|left|thumb|Figure 3. Further Hydrogen Bonding between protein and Mavoglurant]] | ||
</StructureSection> | </StructureSection> | ||
== References == | == References == | ||
<references/> | <references/> | ||
Revision as of 18:56, 28 March 2016
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