Sandbox Reserved 431: Difference between revisions

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==Binding Interactions==
==Binding Interactions==


The binding of Vitamin D3 occurs in a channel between the G and I helices and B' helix and B-C loop. In the <scene name='48/483888/Spacefilled_binding_site/1'>Space filling representation </scene> you can see the residues that interact to bind Vitamin D3 and the channel between. Most of these residues are hydrophobic and thus have non polar interactions. Binding of the substrate causes the access channel to close. The B' helix has a flexible C terminus and can adopt a helix or loop conformation, which has van der waal interactions with the F-G loop. The B' helix unwinds outward to allow entrance of the substrate into the active site channel. CYP2R1 has an extended binding site where the access channel is part of the active site.  
CYP2R1 binds vitamin D3 at an extended binding site that orients the bound molecule to bring its side chain close to the heme Fe and allow for hydroxylation. The binding site is located at the channel between the G and I helices and the B' helix/B-C loop. The active site has non-polar residues which allows for nonpolar interactions with D3. In the <scene name='48/483888/Spacefilled_binding_site/1'>space filling representation </scene> you can see the residues that interact to bind Vitamin D3 and the channel between. Once bound, the D3 molecule is submerged into the protein, with only its 3-OH group showing.
 
The B' helix is one of the substrate recognition sites and has a flexible C which unwinds outward to allow entrance of the substrate into the active site channel. Due to the stabilizing interactions of B' with the F-G loop, binding of the substrate causes the protein to adopt a closed conformation, causing the access channel to close.