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Binding of NTS to the binding site on NTSR1 is enriched by <scene name='72/721539/Binding_pocket_surface/4'>charge complementarity</scene> (PDB code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4GRV 4GRV)]between the positive NTS arginine side chains and the [https://en.wikipedia.org/wiki/Electronegativity electronegative] pocket. The protein is colored by charge: <font color='#FF0000'>negative</font> and <font color='#0000CD'>positive</font>. Two of NTS's arginine residues are colored <font color='#0000CD'>blue</font>. In addition, the C-terminus of <font color='#32CD32'>NTS</font> forms a <scene name='72/721539/Binding_site_charges/4'>salt bridge</scene> (PDB code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4GRV 4GRV)] with Arg328 of <font color='#A9A9A9'>NTSR1</font>. Three  [https://en.wikipedia.org/wiki/Hydrogen_bond hydrogen bonds] are made between the side chains of NTS and the receptor while most of the interactions are a result of [https://en.wikipedia.org/wiki/Van_der_Waals_force Van der Waals] interactions. The binding pocket is partially capped by a <scene name='72/721539/B-hairpin_loop/1'>Β-hairpin loop</scene> at the proximal end of the receptor's N-terminus.<ref name="White"/> The interactions in the binding site cause a wide spread conformational change in the receptor leading to the receptor to adopt an active conformation. This active conformation allows for the activation of the associated intracellular G-protein.  
Binding of NTS to the binding site on NTSR1 is enriched by <scene name='72/721539/Binding_pocket_surface/4'>charge complementarity</scene> (PDB code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4GRV 4GRV)]between the positive NTS arginine side chains and the [https://en.wikipedia.org/wiki/Electronegativity electronegative] pocket. The protein is colored by charge: <font color='#FF0000'>negative</font> and <font color='#0000CD'>positive</font>. Two of NTS's arginine residues are colored <font color='#0000CD'>blue</font>. In addition, the C-terminus of <font color='#32CD32'>NTS</font> forms a <scene name='72/721539/Binding_site_charges/4'>salt bridge</scene> (PDB code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4GRV 4GRV)] with Arg328 of <font color='#A9A9A9'>NTSR1</font>. Three  [https://en.wikipedia.org/wiki/Hydrogen_bond hydrogen bonds] are made between the side chains of NTS and the receptor while most of the interactions are a result of [https://en.wikipedia.org/wiki/Van_der_Waals_force Van der Waals] interactions. The binding pocket is partially capped by a <scene name='72/721539/B-hairpin_loop/1'>Β-hairpin loop</scene> at the proximal end of the receptor's N-terminus.<ref name="White"/> The interactions in the binding site cause a wide spread conformational change in the receptor leading to the receptor to adopt an active conformation. This active conformation allows for the activation of the associated intracellular G-protein.  
=== Hydrophobic Stacking ===
=== Hydrophobic Stacking ===
A major player in the transduction of the extracellular signal to the intracellular G-protein is the <scene name='72/727765/Hydrogen_bonding_network/4'>hydrogen bonding network</scene> (PDB code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4GRV 4GRV)]that links the bound <font color='#32CD32'>hormone</font> with the [https://en.wikipedia.org/wiki/Hydrophobe hydrophobic] core of the <font color='#A9A9A9'>neurotensin receptor</font>. The carboxylate of Leu13 of NTS forms a hydrogen bond network with R327, R328, and Y324. The Tyr324, in turn, is brought into an orientation to make the formation of a <scene name='72/727765/Hydrophobic_stacking_4xee/2'>hydrophobic stacking</scene> (PDB Code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4XEE 4XEE]) network between F358, W321, A157, and F317 possible.<ref name="Krumm">PMID:23051748</ref> The effects that this network has on the activation of the intracellular G-protein was examined by the [https://en.wikipedia.org/wiki/Mutagenesis mutagenesis] of amino acids involved in this network. Mutagenesis of <scene name='72/727765/Overall_structure/12'>A86L</scene>, <scene name='72/727765/Overall_structure/13'>E166A</scene>, <scene name='72/727765/Overall_structure/14'>G125L</scene>, <scene name='72/727765/Overall_structure/15'>L310A</scene>, <scene name='72/727765/Overall_structure/16'>F358A</scene>, and <scene name='72/727765/Overall_structure/17'>V360A</scene>  (PDB code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4GRV 4GRV)] showed that when this interaction was disrupted, the receptor no longer was able to activate the G-protein. <ref name="Krumm"/> This discovery lead to the conclusion that the conformational changes caused by this stacking allows for the signal to be moved from the extracellular binding site through the transmembrane helices of the receptor to the intracellular region activating the G-protein.  
A major player in the transduction of the extracellular signal to the intracellular G-protein is the <scene name='72/727765/Hydrogen_bonding_network/4'>hydrogen bonding network</scene> (PDB code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4GRV 4GRV)]that links the bound <font color='#32CD32'>hormone</font> with the [https://en.wikipedia.org/wiki/Hydrophobe hydrophobic] core of the <font color='#A9A9A9'>neurotensin receptor</font>. The carboxylate of Leu13 of NTS forms a hydrogen bond network with R327, R328, and Y324. The Tyr324, in turn, is brought into an orientation to make the formation of a <scene name='72/727765/Hydrophobic_stacking_4xee/2'>hydrophobic stacking</scene> (PDB Code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4XEE 4XEE]) network between F358, W321, A157, and F317 possible.<ref name="Krumm">PMID:23051748</ref> The effects that this network has on the activation of the intracellular G-protein was examined by the [https://en.wikipedia.org/wiki/Mutagenesis mutagenesis] of amino acids that disrupted the formation of this network. Mutagenesis of <scene name='72/727765/Overall_structure/12'>A86L</scene>, <scene name='72/727765/Overall_structure/13'>E166A</scene>, <scene name='72/727765/Overall_structure/14'>G125L</scene>, <scene name='72/727765/Overall_structure/15'>L310A</scene>, <scene name='72/727765/Overall_structure/16'>F358A</scene>, and <scene name='72/727765/Overall_structure/17'>V360A</scene>  (PDB code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4GRV 4GRV)] showed that when this interaction was disrupted, the receptor no longer was able to activate the G-protein. <ref name="Krumm"/> This discovery lead to the conclusion that the conformational changes caused by this stacking allows for the signal to be moved from the extracellular binding site through the transmembrane helices of the receptor to the intracellular region activating the G-protein.  
== Sodium Binding Pocket ==
== Sodium Binding Pocket ==
[[Image:4XEE closed sodium pocket.png|100 px|left|thumb|Figure 2: Closed form of sodium binding pocket that caps the entrance of sodium into the top of the binding pocket. (PDB Code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4XEE 4XEE])]]  
[[Image:4XEE closed sodium pocket.png|100 px|left|thumb|Figure 2: Closed form of sodium binding pocket that caps the entrance of sodium into the top of the binding pocket. (PDB Code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4XEE 4XEE])]]  

Latest revision as of 07:06, 19 April 2016

Neurotensin Receptor (NTSR1)

Neurotensin G-Protein Coupled Receptor (PDB Codes 4GRV and 4XEE)

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References