Practical Guide to Homology Modeling: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older editNewer edit →
Eric Martz (talk | contribs)
ConfirmAccount, Editor, Print3D, Tester, journal, Administrators
30,118 edits
Eric Martz (talk | contribs)
ConfirmAccount, Editor, Print3D, Tester, journal, Administrators
30,118 edits
Line 54: Line 54:
#Click on “Choose a query type” and select Sequence under “Sequence Features”.
#Click on “Choose a query type” and select Sequence under “Sequence Features”.
#Paste your query sequence into the large box, and click the “Submit Query” button at the lower right of the search interface box.
#Paste your query sequence into the large box, and click the “Submit Query” button at the lower right of the search interface box.
#The best hits will be listed first, starting below “Showing 1-25 of XXX Results”.  Notice that each hit starts with a large, bold PDB ID. In the “Alignment” section of the first hit, click on “Display for All Results”. Also in the “Compound” section, click “Display for All Results”.
#The best hits will be listed first, starting below “Showing 1-25 of NNN”.  Notice that each hit starts with a large, bold PDB ID.


For each hit, notice the “Identities” above the sequence alignment box. The denominator tells you the length of the sequence alignment. The percentage tells you the sequence identity of the alignment.
For each hit, notice the “Identities” above the sequence alignment box. The denominator tells you the length of the sequence alignment. The percentage tells you the sequence identity of the alignment.
Retrieved from "https://proteopedia.org/Practical_Guide_to_Homology_Modeling"