3m1e: Difference between revisions

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==Crystal Structure of BenM_DBD==

== Structural highlights ==

<table><tr><td colspan='2'>[[3m1e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Acinetobacter_sp._adp1 Acinetobacter sp. adp1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1E OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M1E FirstGlance].

<table><tr><td colspan='2'>[[3m1e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aciad Aciad]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1E OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M1E FirstGlance].

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>

<tr id='gene'><td class="sblockLbl">[[Gene|Gene:]]</td><td class="sblockDat">ACIAD1435, benM, benR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=62977 ~~Acinetobacter sp. ADP1~~])</td></tr>

<tr id='gene'><td class="sblockLbl">[[Gene|Gene:]]</td><td class="sblockDat">ACIAD1435, benM, benR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=62977 ACIAD])</td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m1e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m1e RCSB], [http://www.ebi.ac.uk/pdbsum/3m1e PDBsum]</td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m1e OCA], [http://pdbe.org/3m1e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m1e RCSB], [http://www.ebi.ac.uk/pdbsum/3m1e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m1e ProSAT]</td></tr>

</table>

== Function ==

[[http://www.uniprot.org/uniprot/BENM_ACIAD BENM_ACIAD]] Positive regulator of the ben and cat genes for benzoate degradation. BenM is necessary for ben gene expression but not for expression of the cat genes, which can be regulated by CatM. Binds to the inducers cis,cis-muconate and benzoate.

__TOC__

</StructureSection>

[[Category: ~~Acinetobacter sp. adp1~~]]

[[Category: Aciad]]

[[Category: Alanazi, A]]

[[Category: Momany, C]]

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 ==Crystal Structure of BenM_DBD==
 <StructureSection load='3m1e' size='340' side='right' caption='[[3m1e]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3m1e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_sp._adp1 Acinetobacter sp. adp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M1E FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3m1e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aciad Aciad]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M1E FirstGlance]. <br>
 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ACIAD1435, benM, benR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=62977 Acinetobacter sp. ADP1])</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ACIAD1435, benM, benR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=62977 ACIAD])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m1e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m1e RCSB], [http://www.ebi.ac.uk/pdbsum/3m1e PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m1e OCA], [http://pdbe.org/3m1e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m1e RCSB], [http://www.ebi.ac.uk/pdbsum/3m1e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m1e ProSAT]</span></td></tr>
 </table>
+== Function ==
+[[http://www.uniprot.org/uniprot/BENM_ACIAD BENM_ACIAD]] Positive regulator of the ben and cat genes for benzoate degradation. BenM is necessary for ben gene expression but not for expression of the cat genes, which can be regulated by CatM. Binds to the inducers cis,cis-muconate and benzoate.
 __TOC__
 </StructureSection>
-[[Category: Acinetobacter sp. adp1]]
+[[Category: Aciad]]
 [[Category: Alanazi, A]]
 [[Category: Momany, C]]