2zet: Difference between revisions
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==Crystal structure of the small GTPase Rab27B complexed with the Slp homology domain of Slac2-a/melanophilin== | ==Crystal structure of the small GTPase Rab27B complexed with the Slp homology domain of Slac2-a/melanophilin== | ||
<StructureSection load='2zet' size='340' side='right' caption='[[2zet]], [[Resolution|resolution]] 3.00Å' scene=''> | <StructureSection load='2zet' size='340' side='right' caption='[[2zet]], [[Resolution|resolution]] 3.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2zet]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[2zet]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZET OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZET FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Rab27b ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Rab27b ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice]), Slac2a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zet OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zet RCSB], [http://www.ebi.ac.uk/pdbsum/2zet PDBsum], [http://www.topsan.org/Proteins/RSGI/2zet TOPSAN]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zet OCA], [http://pdbe.org/2zet PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zet RCSB], [http://www.ebi.ac.uk/pdbsum/2zet PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zet ProSAT], [http://www.topsan.org/Proteins/RSGI/2zet TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
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<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zet ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
<div class="pdbe-citations 2zet" style="background-color:#fffaf0;"></div> | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Lk3 transgenic mice]] | ||
[[Category: Fukuda, M]] | [[Category: Fukuda, M]] | ||
[[Category: Hanawa-Suetsugu, K]] | [[Category: Hanawa-Suetsugu, K]] | ||
Revision as of 08:02, 5 August 2016
Crystal structure of the small GTPase Rab27B complexed with the Slp homology domain of Slac2-a/melanophilin
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Proteopedia Page Contributors and Editors (what is this?)
Categories:
- Lk3 transgenic mice
- Fukuda, M
- Hanawa-Suetsugu, K
- Kanno, E
- Kukimoto-Niino, M
- Structural genomic
- Sakamoto, A
- Shirouzu, M
- Terada, T
- Yokoyama, S
- Complex
- Effector
- G-protein
- Gtp-binding protein
- Gtpase
- Lipoprotein
- Melanophilin
- Membrane
- Metal-binding
- Methylation
- National project on protein structural and functional analyse
- Nppsfa
- Nucleotide-binding
- Prenylation
- Rab
- Rab27b
- Rsgi
- Signaling protein
- Slp homology domain
- Zinc-finger
