Ribosome 3D structures: Difference between revisions

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*30S subunit + RNA
*30S subunit + RNA


**[[2zm6]], [[1n36]], [[1j5e]], [[3oto]] - Tt30S ribosomal subunit+THX+16S RRNA – ''Thermus thermophiles''<br />
**[[2zm6]], [[1n36]], [[1j5e]], [[3oto]] - Tt30S ribosomal subunit+THX+16S RRNA – Thermus thermophiles<br />
**[[2vqe]], [[2vqf]], [[2uuc]], [[2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[3pyn]], [[3pyq]], [[3pys]], [[3pyu]] - Tt30S ribosomal subunit+16S RRNA+RNA fragment<br />
**[[2vqe]], [[2vqf]], [[2uuc]], 2e5l]], [[2uu9]], [[2uua]], [[2uub]] - Tt30S ribosomal subunit+16S RRNA+RNA fragment<br />
**[[3kc4]] - Ec30S ribosomal subunit - ''Escherichia coli''<br />
**[[3i1m]], [[3i1o]]
**[[3i1m]], [[3i1o]], [[3df1]], [[3df3]], [[2vho]], [[2vhp]], [[2avy]], [[2aw7]], [[1pnx]] - Ec30S ribosomal subunit+16S RRNA<br />
[[1i94]], [[1fka]], [[4dr1]] -  Tt30S ribosomal subunit+16S RRNA<br />
**[[1i94]], [[1fka]], [[3uxs]], [[3uxt]], [[4dr1]] -  Tt30S ribosomal subunit+16S RRNA<br />
**[[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - Tt30S ribosomal subunit+16S RRNA (mutant)<br />
**[[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - Tt30S ribosomal subunit+16S RRNA (mutant)<br />
**[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] - Tt30S ribosomal subunit+16S RRNA + mRNA<br />
**[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] - Tt30S ribosomal subunit+16S RRNA + mRNA<br />
**[[1p87]] - Ec30S ribosomal subunit+16S RRNA – Cryo-EM<br />
   
**[[3bbn]] - 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach<br />
 
*30S subunit + chain release factor
 
**[[3mr8]], [[3ms0]] – Tt30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA <br />
**[[3d5a]] [[3d5c]] - Tt30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
**[[3zvo]] - Tt30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3<br />
**[[2b64]] - Tt30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1<br />
**[[2b9m]] - Tt30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2<br />
**[[2x9r]], [[2x9t]], [[2wh1]], [[2wh3]] - Tt30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA<br />
**[[3f1e]], [[3f1g]] - Tt30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA<br />
**[[4kfh]], [[4kfk]] - Tt30S ribosomal subunit+16S RRNA+ RF-2 + mRNA+ P-site tRNA fMet<br />
 
*30S subunit +tRNA+mRNA
*30S subunit +tRNA+mRNA


**[[2hgi]] - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet<br />
**[[3t1h]], [[3t1y]] - Tt30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA<br />  
**[[4l6k]], [[4l6m]] - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA<br />
**[[3v6u]], [[3v6v]] - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br />
**[[2hgp]] - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
omal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br />
**[[3t1h]], [[3t1y]] - Tt30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA<br />
**[[3tvf]], [[3tvg]], [[3uyd]], [[3uyf]] - Tt30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA<br />
**[[3zn7]], [[3znd]] - Tt30S ribosomal subunit+16S RRNA+A-site tRNA Ile agmatidine + E-site tRNA Ile agmatidine + mRNA<br />
**[[3uz6]], [[3uz7]], [[3uzg]], [[3uzi]] - Tt30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA<br />
**[[2i2p]], [[2i2u]] - Ec30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
**[[2hgr]], [[3v6u]], [[3v6v]], [[4ej9]], [[4eja]] - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br />
**[[1yl4]] – Tt30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br />
**[[1pns]] - Ec30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA <br />
**[[3j13]] - Ec30S ribosomal subunit+ P-site tRNA +16S RRNA+mRNA – Cryo-EM<br />
**[[3j0u]], [[3j0v]], [[3j0x]], [[3j0z]], [[3j10]], [[3j20]] - Ec30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM<br />
**[[1xnq]], [[1xnr]] - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA<br />
**[[1xnq]], [[1xnr]] - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA<br />
**[[4gkj]], [[4gkk]] - Tt30S ribosomal subunit +16S RRNA +THX + mRNA + tRNA Met<br />
**[[4gkj]], [[4gkk]] - Tt30S ribosomal subunit +16S RRNA +THX + mRNA + tRNA Met<br />
**[[4jv5]], [[4jya]], [[4k0k]], [[4k0l]] - Tt30S ribosomal subunit +16S RRNA +THX + mRNA + ASL-tRNA <br />
**[[4jv5]], [[4jya]], [[4k0k]] - Tt30S ribosomal subunit +16S RRNA +THX + mRNA + ASL-tRNA <br />


*30S subunit +A-site tRNA
*30S subunit +A-site tRNA
Line 49: Line 25:
**[[1n32]], [[1n33]] - Tt30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA<br />
**[[1n32]], [[1n33]] - Tt30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA<br />
**[[1n34]] - Tt30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA<br />
**[[1n34]] - Tt30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA<br />
**[[1xmo]], [[1xmq]] - Tt30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA<br />
**[[1xmo]], 1xmq]] - Tt30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA<br />
**[[2uxb]] - Tt30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA<br />
**[[2uxb]] - Tt30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA<br />


*30S subunit+P-site tRNA
*30S subunit+P-site tRNA


**[[3i8g]] - Tt30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA<br />
**[[1ibk]] - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br />
**[[3i8h]], [[3i9b]], [[3i9d]] - Tt30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA<br />
 
**[[1ibk]] - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br />
**[[2wwl]] - Ec30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA <br />
**[[3i1q]] - Ec30S ribosomal subunit+P-site tRNA hairpin+mRNA <br />
**[[3i1s]], [[3i1z]], [[3i21]] - Ec30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA<br />
**[[2om7]] – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment<br />
**[[2om7]] – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment<br />


Line 66: Line 38:
**[[1ibl]], [[1ibm]] - Tt30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA<br />
**[[1ibl]], [[1ibm]] - Tt30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA<br />


*30S subunit+P-site tRNA+E-site tRNA
**[[2ow8]] - Tt30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA<br />
**[[2b9o]] - Tt30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA<br />
**[[2qnh]] -  Tt30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
**[[2wdg]], [[2wdh]], [[2wdk]], [[2wdm]] - Tt30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe<br />


*30S subunit+A-site tRNA+P-site tRNA+E-site tRNA
*30S subunit+A-site tRNA+P-site tRNA+E-site tRNA


**[[2gy9]], [[2gyb]] -  Ec30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM<br />
**[[1jgo]], [[1jgp]], [[1jgq]] -  Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br />
**[[1jgo]], [[1jgp]], [[1jgq]], [[1gix]] -  Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br />
**[[3e1a]], [[3e1c]] -  Ec30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA<br />


*30S subunit + antibiotics
*30S subunit + antibiotics


**[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[3oge]], [[3ogy]], [[3ohc]], [[3ohd]], [[3ohy]], [[3oi0]], [[3oi2]], [[3oi4]], [[4dr3]] -  Tt30S ribosomal subunit+16S RRNA+antibiotic<br />
**[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr3]] -  Tt30S ribosomal subunit+16S RRNA+antibiotic<br />
**[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]] - Tt30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic <br />
**[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]] - Tt30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic <br />
**[[2qbb]], [[2qb9]], [[1vs5]], [[1vs7]] , [[2qan]], [[2qal]], [[2qou]], [[2qow]], [[2qoy,]] [[2qp0]], [[2z4k]], [[2z4m]], [[3oaq]], [[3oar]], [[3ofa]], [[3ofb]], [[3ofo]], [[3ofp]], [[3ofx]], [[3ofy]], [[3or9]], [[3ora]] - Ec30S ribosomal subunit+16S RRNA+antibiotic<br />
**[[3knj]], [[3knh]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+ antibiotic<br />
**[[4gaq]], [[4gas]] - Ec30S ribosomal subunit+16S RRNA+ mRNA + antibiotic<br />
**[[3sfs]] - Ec30S ribosomal subunit+16S RRNA+ mRNA + RF-3 + antibiotic<br />
**[[2j00]], [[2j02]] - Tt30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA<br />
**[[3knl]], [[3knm]], [[3knn]], [[3kno]], [[3knj]], [[3knh]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+ antibiotic<br />
**[[3uz3]], [[3uz4]] - Tt30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA + paromomycin<br />
**[[4g5k]], [[4g5m]], [[4g5t]], [[4g5v]] - Tt30S ribosomal subunit+16S RRNA + tRNA fMet + mRNA + antibiotics<br />
**[[3uzl]], [[3uzm]] - Tt30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA + paromomycin<br />


*30S subunit + ribosome recycling factor
*30S subunit + ribosome recycling factor


**[[2qbd]], [[2qbf]] -Ec30S ribosomal subunit+16S RRNA+ribosome recycling factor<br />
**[[3r8n]], [[3r8o]] - Ec30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA - Escherichia coli <br />
**[[3r8n]], [[3r8o]], [[4gd1]], [[4gd2]] - Ec30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA<br />
**[[2qbh]], [[2qbj]] - Ec30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin<br />
**[[2v46]], [[2v48]] - Tt30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet<br />


*30S subunit + elongation factor
*30S subunit + elongation factor
 
**[[2wri]], [[2wrk]] - Tt30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G<br />
**[[4btc]] - Tt30S ribosomal subunit+THX+RNA +16S RRNA+elongation factor G<br />
**[[2wrn]], [[2wrq]] - Tt30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4<br />
**[[3fic]] - Tt30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A<br />
**[[4abr]] - Tt30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU<br />
**[[2y0u]], [[2y0w]], [[2y0y]], [[2y12]], [[2y10]], [[2y18]], [[2y14]], [[2y16]] - Tt30S ribosomal subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU<br />
**[[3fih]] - Ec30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU<br />
**[[3izv]] - Ec30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU<br />
**[[3j18]] - Ec30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+ mRNA + SSRA-binding protein + formyl-Met specific initiator tRNA + elongation factor G – Cryo-EM<br />
**[[3izw]] - Ec30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU<br />
**[[3huw]], [[3huy]] - Tt30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P<br />
**[[4b8f]], [[4b8h]] - Tt30S ribosomal subunit+THX+RNA+mRNA +16S RRNA+elongation factor G<br />
**[[4btc]], [[4kdg]], [[4kdj]] - Tt30S ribosomal subunit+THX+RNA +16S RRNA+elongation factor G<br />
**[[4juw]] - Tt30S ribosomal subunit+THX+ tRNA Phe +16S RRNA + mRNA +elongation factor G<br />
**[[4kbt]], [[4kbv]], [[4kcy]], [[4kd0]], [[4kd8]], [[4kda]] - Tt30S ribosomal subunit+THX+ tRNA Met +16S RRNA + mRNA + viomycin + elongation factor G<br />
**[[4kiy]], [[4kj0]], [[4kj2]], [[4kj4]], [[4kj6]], [[4kj8]], [[4kja]], [[4kjc]] - Ec30S ribosomal subunit +16S RRNA + viomycin + elongation factor G<br />


*30S subunit + translation initiation factor
*30S subunit + translation initiation factor
Line 123: Line 63:


*30S subunit + various proteins
*30S subunit + various proteins
 
**[[3kiq]], [[3kis]], [[3kiu]], [[3kix]] - Tt30S ribosomal subunit+toxin RelE+16S RRNA<br />
**[[1x18]] – TtRPS2+TtRPS7+TtRPS11+TtRPS18+GTP-binding protein ERA+RNA fragments<br />  
**[[2xfz]], [[2xg1]] - Tt30S ribosomal subunit+colicin-E3 fragment+16S RRNA+mRNA+E-site tRNA+THX<br />
**[[1voq]], [[1vos]] , [[1vov]], [[1vox]], [[1voz]] - Ec30S ribosomal subunit+protein Y+16S RRNA<br />
**[[3j36]] - Ec30S ribosomal subunit+ tetracycline resistance protein +16S RRNA + mRNA + P-tRNA – Cryo-EM<br />
**[[1x18]] – TtRPS2+TtRPS7+TtRPS11+TtRPS18+GTP-binding protein ERA+RNA fragments<br />
**[[4dh9]], [[4dhb]] - Tt30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ<br />
**[[3v22]], [[3v24]], [[3v26]], [[3v28]] - Tt30S ribosomal subunit +16S RRNA +THX + modulation factor<br />
**[[3v2c]], [[3v2e]] - Tt30S ribosomal subunit +16S RRNA +THX + ribosome-associated inhibitor<br />
**[[3j00]] – EcRPS2 + 16S RRNA + FTSQ + apolipoprotein A-I<br />
**[[2ykr]] - EcRPS2 + 16S RRNA + GMPPNP + GTPase RSGA<br />
**[[2ykr]] - EcRPS2 + 16S RRNA + GMPPNP + GTPase RSGA<br />
**[[4a2i]] - EcRPS2 + 16S RRNA + GTPase RSGA – Cryo EM<br />
**[[4a2i]] - EcRPS2 + 16S RRNA + GTPase RSGA – Cryo EM<br />
**[[3uoq]] - EcRPS2 + 16S RRNA + mRNA + peptide chain release factor<br />
**[[4adv]] - EcRPS2 + 16S RRNA + methyltransferase – Cryo EM<br />
**[[4adv]] - EcRPS2 + 16S RRNA + methyltransferase – Cryo EM<br />


*40S ribosomal subunit
*40S ribosomal subunit  


**[[3jyv]] - Tl40S ribosomal subunit+RACK1+S19E+P-site tRNA – ''Thermomyces lanuginosus''<br />
**[[4v5o]] - Tet40S ribosomal subunit+RACK1 – Tetrahymena thermophila<br />
**[[2xzm]], [[2xzn]] - Tet40S ribosomal subunit+RACK1 – ''Tetrahymena thermophila''<br />
**[[1s1h]] - y40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast<br />
**[[3izb]] - y40S ribosomal subunit+ RACK1 – Cryo-EM<br />
**[[3o2z]], [[3o30]] - y40S ribosomal subunit+ RACK1<br />
**[[3u5c]], [[3u5g]] - y40S ribosomal subunit+ RACK1 + suppressor protein SMT1<br />
**[[3iz6]] - w40S ribosomal subunit+RACK1 – wheat<br />
**[[3j38]] - Dm40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – ''Drosophila melanogaster'' – Cryo-EM<br />
**[[3j3a]] - h40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – human – Cryo-EM<br />
**[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
**[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
**[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
**[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
**[[4kzz]] - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br />
**[[4kzz]] - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br />  
**[[2zkq]] – d40S ribosomal subunit+RACK1+RRNA fragment – dog - Cryo-EM<br />
**[[4bts]] - r40S ribosomal subunit+ 18SRRNA + EIF1 + EIF1A <br />
**[[3zey]] - Tb40S ribosomal subunit – ''Trypanosoma brucei'' – Cryo-EM<br />
**[[4bpe]], [[4bpn]], [[4bpo]], [[4bpp]] - r40S ribosomal subunit+ 18SRRNA + EIF1 + EIF1A <br />


*50S subunit+RNA
*50S subunit+RNA


**[[2x9s]], [[2x9u]], [[3kni]], [[3knk]], [[3knm]], [[3kno]], [[3hux]], [[3huz]], [[2wdi]], [[2wdj]] [[2wdl]] [[1vsp]], [[2v47]] , [[2v49]], [[1vsa]], [[3pyo]], [[3pyr]], [[3pyt]], [[3pyv]], [[3v6w]], [[3v6x]], [[3zne]], [[4btd]], [[4ejb]], [[4ejc]], [[4k0m]], [[4k0q]], [[2wrj]], [[2wrl]], [[2wro]], [[2wrr]], [[2wh2]], [[2wh4]], [[2hgj]],  [[2hgq]], [[2hgu]],[[2j01]], [[2j03]], [[1yl3]],  [[3i8i]], [[3f1f]], [[3f1h]], [[2b66]], [[2b9n]], [[2b9p]], [[1giy]], [[2xqe]], [[2y0v]], [[2y0x]], [[2y0z]], [[2y11]], [[2y13]], [[2y15]], [[2y17]], [[2y19]], [[3zvp]], [[4abs]], [[4b8g]], [[4b8i]], [[4jux]], [[4kbu]], [[4kbw]], [[4kcz]], [[4kd2]], [[4kd9]], [[4kdb]], [[4kdh]], [[4kdk]], [[4kfi]], [[4kfl]] -  Tt50S subunit+5S RRNA+23S RRNA <br />
**[[3kni]], [[3knk]], [[3knm]], [[3kno]],   [[3v6w]], [[3v6x]], [[3zne]], [[4k0m]], [[4k0q]],       -  Tt50S subunit+5S RRNA+23S RRNA <br />
**[[2xg0]], [[2xg2]], [[3kir]], [[3kit]], [[3kiw]], [[3kiy]] – Tt50S subunit+RNA fragments<br />
**[[3i1n]], [[3i1p]],   - Ec50S subunit+5S RRNA+23S RRNA <br />  
**[[3fin]], [[2xtg]], [[2xux]] - Tt50S subunit+5S RRNA+23S RRNA – Cryo-EM<br />
**[[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit+5S RRNA+23S RRNA – Deinococcus radiodurans<br />
**[[2wwq]] – Ec50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA <br />
**[[2qa4]], [[3cc2]], [[1s72]], [[4v9f]], [[1kqs]], 1qvg, [[1jj2]], [[1ffk]]  -  Hm50S subunit+5S RRNA+23S RRNA – Haloarcula marismortui<br />
**[[3i1n]], [[3i1p]], [[3i1r]], [[3i1t]], [[3i20]], [[3i22]], [[3e1b]], [[3e1d]], [[3df2]], [[3df4]], [[2vhn]], [[2qov]], [[2qox]], [[2i2t]], [[2i2v]], [[1vs6]], [[1vs8]], [[2aw4]], [[2awb]], [[3ofd]], [[3og0]], [[3oas]], [[3oat]], [[3uos]], [[3r8s]], [[3r8t]], [[3j37]], [[4kix]], [[4kiz]], [[4kj1]], [[4kj3]], [[4kj5]], [[4kj7]], [[4kj9]], [[4kjb]] - Ec50S subunit+5S RRNA+23S RRNA <br />
**[[3cc7]], [[3cce]], [[3ccj]], [[3ccl]], [[3ccm]], [[3ccq]], [[3ccr]], [[3ccs]], [[3ccu]], [[3ccv]] -  Hm50S subunit+5S RRNA+23S RRNA (mutant) <br />
**[[3fik]], [[2gya]], [[2gyc]], [[1p85]], [[1p86]], [[3izt]], [[3izu]], [[3j0t]], [[3j0w]], [[3j0y]], [[3j11]], [[3j12]], [[3j14]], [[3j19]] - Ec50S subunit+5S RRNA+23S RRNA – Cryo-EM<br />
**[[3kcr]] - Ec50S subunit+5S RRNA+23S RRNA+preprotein translocase<br />
**[[3bbo]] -  s50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM <br />
**[[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit+5S RRNA+23S RRNA – ''Deinococcus radiodurans''<br />
**[[4hub]],[[4i4m]],[[2qa4]], [[3cc2]], [[1s72]], [[1kqs]], [[1qvg]], [[1jj2]], [[1ffk]]  -  Hm 50S subunit+5S RRNA+23S RRNA –''Haloarcula marismortui''<br />
**[[3cc7]], [[3cce]], [[3ccj]], [[3ccl]], [[3ccm]], [[3ccq]], [[3ccr]], [[3ccs]], [[3ccu]], [[3ccv]] -  Hm 50S subunit+5S RRNA+23S RRNA (mutant) <br />
**[[1yj9]] - Hm50S subunit (mutant)+5S RRNA+23S RRNA <br />
**[[1yj9]] - Hm50S subunit (mutant)+5S RRNA+23S RRNA <br />
**[[1qvf]]- Hm50S subunit+5S RRNA+23S RRNA + deacylated tRNA minihelix<br />
**[[1qvf]]- Hm50S subunit+5S RRNA+23S RRNA + deacylated tRNA minihelix<br />
**[[1q86]] - Hm50S subunit+5S RRNA+23S RRNA+CCA-Phe-caproic acid-biotin<br />
**[1q86]] - Hm50S subunit+5S RRNA+23S RRNA+CCA-Phe-caproic acid-biotin<br />
**[[3cma]], [[3cme]], [[1vq8]], [[1vq9]], [[1m90]] - Hm50S subunit+5S RRNA+23S RRNA+CCA+CCA-Phe-CAP-BIO<br />
**[[3cma]], [[3cme]], [[1vq8]], [[1vq9]], [[1m90]] - Hm50S subunit+5S RRNA+23S RRNA+CCA+CCA-Phe-CAP-BIO<br />
**[[1vq4]], [[1vq5]], [[1vq7]], [[1vql]], [[1vqm]], [[1vqp]] – Hm50S subunit+5S RRNA+23S RRNA+transition state analog<br />
**[[1vq4]], [[1vq5]], [[1vq7]], [[1vql]], [[1vqm]], [[1vqp]] – Hm50S subunit+5S RRNA+23S RRNA+transition state analog<br />
**[[1vq6]], [[1vqk]], [[1vqn]] – Hm50S subunit+5S RRNA+23S RRNA+ c-hpmn+CCA-Phe-caproic acid-biotin<br />
**[[1vq6]], [[1vqk]], [[1vqn]] – Hm50S subunit+5S RRNA+23S RRNA+ c-hpmn+CCA-Phe-caproic acid-biotin<br />
**[[1vqo]] – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN<br />
**[[1vqo]] – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN<br />
**[[3iy9]] – 50S subunit – ''Leishmania taretolae''<br />
**[[3iy9]] – 50S subunit – Leishmania taretolae<br />
**[[2ftc]] – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM<br />
**[[2ftc]] – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM<br />
**[[3j21]] –  50S subunit + P0 + LX – ''Pyrococcus furiosus'' – Cryo EM<br />
**[[3j3v]], [[3j3w]] - 50S subunit+5S RRNA+23S RRNA – Bacillus subtilis<br />
**[[3j3v]], [[3j3w]] - 50S subunit+5S RRNA+23S RRNA – ''Bacillus subtilis''<br />


*50S subunit + antibiotics
*50S subunit + antibiotics


**[[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[1sm1]], [[1nwx]], [[1nwy]], [[3pio]], [[3pip]] - Dr50S subunit+5S RRNA+23S RRNA+general stress protein Ctc+ antibiotic<br />  
**[[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[1sm1]], [[1nwx]], [[1nwy]], [[3pio]], [[3pip]] - Dr50S subunit+5S RRNA+23S RRNA+general stress protein Ctc+ antibiotic<br />  
**[[4io9]], [[4ioa]], [[4ioc]] - Dr50S subunit+5S RRNA+23S RRNA+ antibiotics<br />
**[[4io9]], [[4ioa]], [[4ioc]] - Dr50S subunit+5S RRNA+23S RRNA+ antibiotics<br />
**[[2qba]], [[2qbc]], [[4gar]], [[4gau]], [[2qam]], [[2qao]], [[2qoz]], [[2qp1]], [[3ofc]], [[3ofz]], [[3ofq]], [[3ofr]], [[1vt2]], [[3orb]], [[4l6j]], [[4l6l]]  - Ec50S subunit+5S RRNA+23S RRNA+ antibiotics<br />
**[[3i55,]] [[3i56]] , [[3g4s]], [[3g4e]], [[3g71]], [[2qex]], [[3cc4]], [[3cd6]], [[1yhq]], [[1yi2]], [[1yij]], [[1yjn]], [[1yjw]], [[2otj]], [[2otl]], [[1yit]], [[1k73]], [[1kc8]], [[1k8a]], [[1k9m]], [[1kd1]], [[1m1k]], [[3cpw]], [[1yit]], [[1q7y]], [[1q81]], [[1q82]], [[1n8r]], [[1nji]], [[3cxc]] - Hm50S subunit+5S RRNA+23S RRNA + antibiotics<br />
**[[3i55]] [[3i56]], [[3g4s]], [[3g4e]], [[3g71]], [[2qex]], [[3cc4]], [[3cd6]], [[1yhq]], [[1yi2]], [[1yij]], [[1yjn]], [[1yjw]], [[2otj]], [[2otl]], [[1yit]], [[1k73]], [[1kc8]], [[1k8a]], [[1k9m]], [[1kd1]], [[1m1k]], [[3cpw]], [[1yit]], [[1q7y]], [[1q81]], [[1q82]], [[1n8r]], [[1nji]], [[3cxc]] - Hm50S subunit+5S RRNA+23S RRNA + antibiotics<br />
**[[3oh5]], [[3oh7]], [[3ohj]], [[3ohk]], [[3ohz]], [[3oi1]], [[3oi3]], [[3oi5]] - Tt50S subunit+5S RRNA+23S RRNA+antibiotic <br />
 
*60S subunit
 
**[[3jyw]] -  60S subunit – ''Thermomyces lanuginosus'' – Cryo-EM<br />
**[[1s1i]], [[1s1h]] - y60S ribosomal subunit+ 5.8S RRNA+ 5S RRNA – Cryo-EM <br />
**[[3izs]] - y60S subunit – Cryo-EM<br />
**[[3u5e]], [[3u5i]] - y60S subunit <br />
**[[3o58]], [[3o5h]] - y60S ribosomal subunit+ 5.8S RRNA+ 5S RRNA + 25S RRNA<br />
**[[3izr]], [[3izt]], [[3izu]], [[3izs]] - w60S subunit <br />
**[[3j39]] – Dm60S subunit – Cryo-EM<br />
**[[3j3b]] – h60S subunit – Cryo-EM<br />
**[[4a17]], [[4a1a]], [[4a1c]], [[4a1e]] - Tet60S ribosomal subunit + 5S RRNA + 5.8S RRNA <br />
**[[3zf7]] - Tb60S subunit - Cryo EM<br />
 
*large + small ribosomal subunit
 
**[[1ml5]] - Ec50S ribosomal subunit+30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA – Cryo-EM<br />
**[[2qan]], [[2qal]], [[2qou]], [[2qow]], [[2qoy,]] [[2qp0]] - Ec50S ribosomal subunit+30S ribosomal subunit<br />
**[[2zkr]] -  d60S ribosomal subunit+30S ribosomal subunit+28S RRNA+5.8S RRNA – dog - Cryo-EM <br />
**[[3j0l]] - r60S ribosomal subunit+40S ribosomal subunit+RRNA fragments+ mRNA fragments – rabbit - Cryo-EM <br />
**[[3j0o]], [[3j0p]], [[3j0q]] - r60S ribosomal subunit+40S ribosomal subunit+RRNA fragments+ mRNA fragments + tRNA – Cryo-EM<br />
**[[3u5b]], [[3u5c]], [[3u5d]], [[3u5e]], [[3u5f]], [[3u5g]], [[3u5h]], [[3u5i]], [[4v88]] - y60S ribosomal subunit+40S ribosomal subunit<br />
**[[1vxu]], [[1vxv]], [[1vxw]], [[3j77]], [[3j78]] - y60S ribosomal subunit+40S ribosomal subunit - rotated ribosome with 1 tRNA<br />
**[[4u3m]], [[4u56]], [[4u3n]], [[4u55]], [[4u3u]], [[4u53]], [[4u4n]], [[4u4o]], [[4u4q]], [[4u4r]], [[4u4u]], [[4u52]], [[4u51]], [[4u4y]], [[4u4z]], [[4u6f]], [[4u50]] - y60S ribosomal subunit+40S ribosomal subunit in complexes with 12 eukaryote-specific and 4 broad-spectrum inhibitors


*50S subunit + ribosome releasing factor (RRF)
*50S subunit + ribosome releasing factor (RRF)


**[[2rdo]] - Ec50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM<br />
**[[2rdo]] - Ec50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM<br />
Line 220: Line 108:
*50S subunit + various proteins
*50S subunit + various proteins


**[[2vhm]] - Ec50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix<br />
**[[2j28]] - Ec50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br />
**[[2j28]] - Ec50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br />
**[[1vor]], [[1vou]], [[1vow]], [[1voy]], [[1vp0]], [[1pnu]], [[1pny]] - Ec50S subunit+5S RRNA+23S RRNA+general stress protein Ctc<br />
**[[3j01]] - Ec50S subunit+5S RRNA+23S RRNA + SECYE – Cryo-EM<br />
**[[1w2b]] - Hm50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal<br />
**[[1w2b]] - Hm50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal<br />


*60S subunit + various proteins
*60S subunit + various proteins


**[[4a18]], [[4a19]], [[4a1b]], [[4a1d]] - Tet60S subunit+ 26S RRNA+ translation initiation factor 6 <br />
**[[4v8p]] - Tet60S subunit+ 26S RRNA+ translation initiation factor 6 <br />
**[[3izs]] – y60S subunit + P0 + P1 + P2 - Cryo EM<br />
**[[3izs]] – y60S subunit + P0 + P1 + P2 – yeast - Cryo EM<br />
**[[3u5i]] – y60S subunit + P0<br />
**[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br />
**[[4b6a]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br />
**[[3o5h]] – y60S subunit + 5S RRNA + 5.8S RRNA + 25S RRNA + P0<br />
**[[3o5h]] – y60S subunit + 5S RRNA + 5.8S RRNA + 25S RRNA + P0<br />
**[[3j39]] – Dm60S subunit + P0 - Cryo EM<br />
**[[3j39]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br />
**[[3j3b]] – h60S subunit + P0 + P1 + P2 – human - Cryo EM<br />
**[[3j3b]] – h60S subunit + P0 + P1 + P2 – human - Cryo EM<br />
**[[2lbf]] – hP1 dimerization domain + P2 dimerization domain - NMR<br />
**[[2lbf]] – hP1 dimerization domain + P2 dimerization domain - NMR<br />
**[[2w1o]] – hP2 dimerization domain - NMR<br />
**[[2w1o]] – hP2 dimerization domain - NMR<br />
**[[4beh]] – hP1 + P2 - NMR<br />
**[[4beh]] – hP1 + P2 - NMR<br />
*70S ribosome
**[[4v4q]], [[4v9d]] - EcRibosome <br />
**[[4v4i]], [[4v83]], [[4v84]], [[4v4s]], [[4v4x]], [[4v4z]], [[4v90]], [[4v42]] – TtRibosome <br />
**[[4v8j]], [[4v97]] – TtRibosome ram mutation<br />
**[[4v8n]] – TtRibosome agmatidine mutation<br />
**[[4v6c]], [[4v6d]], [[4v6e]] – EcRibosome ratcheting<br />
**[[4v69]], [[4v48]], [[4v4a]] – EcRibosome – Cryo-EM<br />
**[[4v6u]] – Ribosome – Pyrococcus furiosus - Cryo-EM<br />
**[[4v4y]], [[4v4j]] – TtRibosome Shine-Dalgarno duplex<br />
**[[4v4v]] – EcRibosome pre-translocational – Cryo-EM<br />
**[[4v5m]] – TtRibosome pre-translocational – Cryo-EM<br />
**[[4v5n]] – TtRibosome post-translocational – Cryo-EM<br />
**[[4v4w]] – EcRibosome SecM-stalled – Cryo-EM<br />
**[[4v65]] – EcRibosome pre-accomodation – Cryo-EM<br />
**[[4v66]] – EcRibosome post-accomodation – Cryo-EM<br />
**[[4v61]] – sRibosome – spinach - Cryo-EM<br />
**[[4v8m]] - TbRibosome – Trypanosoma brucei – Cryo-EM<br />
*70S ribosome complex with mRNA
**[[4v50]] – EcRibosome + mRNA<br />
**[[4v6n]], [[4v6o]], [[4v6p]], [[4v6q]], [[4v6r]], [[4v6s]] – EcRibosome + mRNA – Cryo-EM<br />
**[[4v6f]], [[4v6g]] , [[4v87]], [[4v8b]] , [[4v8d]], [[4v8e]], [[4v9i]] – TtRibosome + mRNA<br />
**[[4v4t]] – TtRibosome + stop codon<br />
**[[4v4p]] – TtRibosome + THRS mRNA operator<br />
*70S ribosome complex with antibiotic
**[[4v52]], [[4v53]], [[4v56]], [[4v57]], [[4v64]], [[4v4h]], [[4v7s]], [[4v7t]], [[4v7u]], [[4v7v]], [[4www]] – EcRibosome + antibiotic<br />
**[[4v54]] – EcRibosome + RRF<br />
**[[4v55]], [[4v5y]] – EcRibosome + antibiotic + RRF<br />
**[[4v51]], [[4v5c]], [[4v5d]], [[4v7w]], [[4v7x]], [[4v7y]], [[4v7z]], [[4v8a]], [[4v9c]] – TtRibosome + antibiotic<br />
**[[4v8c]], [[4v8f]], [[4v9a]], [[4v9b]], [[4v9c]] – TtRibosome + mRNA + antibiotic<br />
**[[4v7l]], [[4v7m]] – Ribosome + antibiotic – Streptomyces puniceus<br />
*70S ribosome complex with release factor
**[[4v5a]] – TtRibosome + RRF<br />
**[[4v63]], [[4v7p]] – TtRibosome + RF-1<br />
**[[4v5e]], [[4v4r]], [[4v67]], [[4v9n]] – TtRibosome + RF-2<br />
**[[4v5j]] – TtRibosome + RF-2 + substrate analog<br />
**[[1ml5]] – EcRibosome + RF-2 – Cryo-EM<br />
**[[4v89]] – EcRibosome + RF-3<br />
**[[4v85]] – EcRibosome + RF-3 + mRNA + antibiotic<br />
**[[4v8o]] – TtRibosome + RF-3<br />
*70S ribosome complex with various proteins
**[[4v5b]] – EcRibosome + PDF-binding helix<br />
**[[4v5h]] – EcRibosome + Tnac leader peptide<br />
**[[4v5k]] – TtRibosome + colicin E3<br />
**[[4v6v]] - EcRibosome+ tetracycline resistance protein + mRNA + P-tRNA – Cryo-EM<br />
**[[4v7j]], [[4v7k]] – TtRibosome + toxin RelE<br />
**[[4v6m]] – EcRibosome + SecYE – Cryo-EM<br />
**[[4v4g]] – EcRibosome + protein Y – Cryo-EM<br />
**[[4v7i]] – EcRibosome +preprotein translocase – Cryo-EM<br />
**[[4v49]] - EcRibosome +general stress protein Ctc – Cryo-EM<br />
**[[4v8g]], [[4v8h]] – TtRibosome + modulation factor <br />
**[[4v8i]] - TtRibosome + ribosome-associated inhibitor<br />
**[[4v95]] – TtRibosome + YAEJ<br />
*70S ribosome complex with elongation factor
**[[4v5f]], [[4v8u]], [[4v9h]] – TtRibosome + elongation factor G<br />
**[[4v9o]] – EcRibosome + elongation factor G<br />
**[[4v9p]] – EcRibosome + antibiotic + elongation factor G<br />
**[[4v47]] – EcRibosome + elongation factor G – Cryo-EM<br />
**[[4v6t]] – EcRibosome + elongation factor G + tRNA-SmpB – Cryo-EM<br />
**[[4v56a] – TtRibosome + elongation factor P<br />
**[[4v6k]], [[4v6l]] – EcRibosome + elongation factor Tu <br />
**[[4v5l]] – EcRibosome + elongation factor Tu + tRNA<br />
**[[4v5g]] – TtRibosome + elongation factor Tu<br />
**[[4v8q]] – TtRibosome + antibiotic + elongation factor Tu<br />
**[[4v68]] – TtRibosome + antibiotic + elongation factor Tu – Cryo-EM<br />
**[[4v5p]], [[4v5q]], [[4v5r]], [[4v5s]] – TtRibosome + elongation factor Tu + tRNA-Trp<br />
**[[4v9j]], [[4v9k]], [[4v9l]], [[4v9m]] – TtRibosome + elongation factor G + tRNA<br />
**[[4v9l]] – TtRibosome + elongation factor G + antibiotic + tRNA<br />
*80S ribosome
**[[4v6w]] - DmRibosome + elongation factor 2 + guanine nucleotide-binding protein – Drosophila melanogaster – Cryo-EM<br />
**[[4v7r]], [[4v88]] – yRibosome  <br />
**[[4v6i]] – yRibosome - Cryo-EM<br />
**[[4v4b]] – yRibosome + elongation factor 2 + antifungal - Cryo-EM<br />
**[[4v7e]] – Ribosome – wheat - Cryo-EM<br />
**[[4v6x]] – Ribosome – human - Cryo-EM<br />
**[[4v5z]] -  dRibosome – Cryo-EM <br />
**[[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]] - rRibosome+ mRNA – Cryo-EM <br />
**[[4v7h]] - TlRibosome+P-site tRNA – Thermomyces lanuginosus<br />


*Mitochondrial ribosome (mitoribosome)
*Mitochondrial ribosome (mitoribosome)
Retrieved from "https://proteopedia.org/Ribosome_3D_structures"