5lnw: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 5lnw is ~~ON HOLD~~

==Crystal structure of Arabidopsis thaliana Pdx1-I320-G3P complex==

~~Authors~~:

== Structural highlights ==

<table><tr><td colspan='2'>[[5lnw]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LNW OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LNW FirstGlance].

~~Description~~:

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HG3:[(2~{R})-2,3,3-TRIS(OXIDANYL)PROPYL]+DIHYDROGEN+PHOSPHATE'>HG3</scene>, <scene name='pdbligand=K8P:[(2~{R},3~{R})-2,3-BIS(OXIDANYL)-3-[[(2~{S})-3-OXIDANYLIDENEPENT-4-EN-2-YL]AMINO]PROPYL]+DIHYDROGEN+PHOSPHATE'>K8P</scene>, <scene name='pdbligand=RP5:5-O-PHOSPHONO-BETA-D-RIBOFURANOSE'>RP5</scene></td></tr>

[[Category: ~~Unreleased Structures~~]]

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/Pyridoxal_5'-phosphate_synthase_(glutamine_hydrolyzing) Pyridoxal 5'-phosphate synthase (glutamine hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.3.6 4.3.3.6] </td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lnw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lnw OCA], [http://pdbe.org/5lnw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lnw RCSB], [http://www.ebi.ac.uk/pdbsum/5lnw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lnw ProSAT]</td></tr>

</table>

== Function ==

[[http://www.uniprot.org/uniprot/PDX13_ARATH PDX13_ARATH]] Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by PDX2. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Also plays an indirect role in resistance to singlet oxygen-generating photosensitizers.<ref>PMID:16157873</ref> <ref>PMID:16236150</ref> <ref>PMID:17468224</ref>

== References ==

__TOC__

</StructureSection>

[[Category: Begley, T P]]

[[Category: Ealick, S E]]

[[Category: Evans, G]]

[[Category: Guedez, G]]

[[Category: Hanes, J W]]

[[Category: Rodrigues, M J]]

[[Category: Royant, A]]

[[Category: Sinning, I]]

[[Category: Strohmeier, M]]

[[Category: Tews, I]]

[[Category: Weber, S]]

[[Category: Windeisen, V]]

[[Category: Zhang, Y]]

[[Category: Beta/alpha barrel]]

[[Category: Glutamine amidotransferase]]

[[Category: Lyase]]

[[Category: Pyridoxal phosphate synthase]]

[[Category: Vitamin b6 biosythesis]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 5lnw is ON HOLD
+==Crystal structure of Arabidopsis thaliana Pdx1-I320-G3P complex==
+<StructureSection load='5lnw' size='340' side='right' caption='[[5lnw]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-Authors:
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5lnw]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LNW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LNW FirstGlance]. <br>
-Description:
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HG3:[(2~{R})-2,3,3-TRIS(OXIDANYL)PROPYL]+DIHYDROGEN+PHOSPHATE'>HG3</scene>, <scene name='pdbligand=K8P:[(2~{R},3~{R})-2,3-BIS(OXIDANYL)-3-[[(2~{S})-3-OXIDANYLIDENEPENT-4-EN-2-YL]AMINO]PROPYL]+DIHYDROGEN+PHOSPHATE'>K8P</scene>, <scene name='pdbligand=RP5:5-O-PHOSPHONO-BETA-D-RIBOFURANOSE'>RP5</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyridoxal_5'-phosphate_synthase_(glutamine_hydrolyzing) Pyridoxal 5'-phosphate synthase (glutamine hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.3.6 4.3.3.6] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lnw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lnw OCA], [http://pdbe.org/5lnw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lnw RCSB], [http://www.ebi.ac.uk/pdbsum/5lnw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lnw ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/PDX13_ARATH PDX13_ARATH]] Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by PDX2. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Also plays an indirect role in resistance to singlet oxygen-generating photosensitizers.<ref>PMID:16157873</ref> <ref>PMID:16236150</ref> <ref>PMID:17468224</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Begley, T P]]
+[[Category: Ealick, S E]]
+[[Category: Evans, G]]
+[[Category: Guedez, G]]
+[[Category: Hanes, J W]]
+[[Category: Rodrigues, M J]]
+[[Category: Royant, A]]
+[[Category: Sinning, I]]
+[[Category: Strohmeier, M]]
+[[Category: Tews, I]]
+[[Category: Weber, S]]
+[[Category: Windeisen, V]]
+[[Category: Zhang, Y]]
+[[Category: Beta/alpha barrel]]
+[[Category: Glutamine amidotransferase]]
+[[Category: Lyase]]
+[[Category: Pyridoxal phosphate synthase]]
+[[Category: Vitamin b6 biosythesis]]