5ogl: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 5ogl is ~~ON HOLD~~ ~~until Paper Publication~~

==Structure of bacterial oligosaccharyltransferase PglB in complex with an acceptor peptide and an lipid-linked oligosaccharide analog==

~~Authors~~:

== Structural highlights ==

<table><tr><td colspan='2'>[[5ogl]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OGL OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OGL FirstGlance].

~~Description~~:

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=9UB:[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]methyl-[oxidanyl-[(2~{Z},6~{Z},10~{Z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl]oxy-phosphinic+acid'>9UB</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>

[[Category: ~~Unreleased Structures~~]]

<tr id='NonStdRes'><td class="sblockLbl">[[Non-Standard_Residue|NonStd Res:]]</td><td class="sblockDat"><scene name='pdbligand=PPN:PARA-NITROPHENYLALANINE'>PPN</scene></td></tr>

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/Transferase Transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.99.19 2.4.99.19] </td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ogl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ogl OCA], [http://pdbe.org/5ogl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ogl RCSB], [http://www.ebi.ac.uk/pdbsum/5ogl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ogl ProSAT]</td></tr>

</table>

== Function ==

[[http://www.uniprot.org/uniprot/PGLB_CAMLR PGLB_CAMLR]] Oligosaccharyltransferase that catalyzes the transfer of a preassembled heptasaccharide from a lipid donor to an asparagine residue in nascent polypeptide chains, affording a beta-linked glycan to the asparagine side chain of target proteins.<ref>PMID:21677752</ref>

== References ==

__TOC__

</StructureSection>

[[Category: Transferase]]

[[Category: Aebi, M]]

[[Category: Boilevin, J]]

[[Category: Darbre, T]]

[[Category: Locher, K P]]

[[Category: Napiorkowska, M]]

[[Category: Reymond, J L]]

[[Category: Sovdat, T]]

[[Category: Bacteria]]

[[Category: Complex]]

[[Category: Membrane protein]]

[[Category: Oligosaccharyltransferase]]

[[Category: Protein n-glycosylation]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 5ogl is ON HOLD  until Paper Publication
+==Structure of bacterial oligosaccharyltransferase PglB in complex with an acceptor peptide and an lipid-linked oligosaccharide analog==
+<StructureSection load='5ogl' size='340' side='right' caption='[[5ogl]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-Authors:
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5ogl]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OGL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OGL FirstGlance]. <br>
-Description:
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9UB:[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]methyl-[oxidanyl-[(2~{Z},6~{Z},10~{Z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl]oxy-phosphinic+acid'>9UB</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PPN:PARA-NITROPHENYLALANINE'>PPN</scene></td></tr>
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Transferase Transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.99.19 2.4.99.19] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ogl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ogl OCA], [http://pdbe.org/5ogl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ogl RCSB], [http://www.ebi.ac.uk/pdbsum/5ogl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ogl ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/PGLB_CAMLR PGLB_CAMLR]] Oligosaccharyltransferase that catalyzes the transfer of a preassembled heptasaccharide from a lipid donor to an asparagine residue in nascent polypeptide chains, affording a beta-linked glycan to the asparagine side chain of target proteins.<ref>PMID:21677752</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Transferase]]
+[[Category: Aebi, M]]
+[[Category: Boilevin, J]]
+[[Category: Darbre, T]]
+[[Category: Locher, K P]]
+[[Category: Napiorkowska, M]]
+[[Category: Reymond, J L]]
+[[Category: Sovdat, T]]
+[[Category: Bacteria]]
+[[Category: Complex]]
+[[Category: Membrane protein]]
+[[Category: Oligosaccharyltransferase]]
+[[Category: Protein n-glycosylation]]