2axq: Difference between revisions
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|PDB= 2axq |SIZE=350|CAPTION= <scene name='initialview01'>2axq</scene>, resolution 1.700Å | |PDB= 2axq |SIZE=350|CAPTION= <scene name='initialview01'>2axq</scene>, resolution 1.700Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand=SO4:SULFATE ION'>SO4</scene> | |LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> | ||
|ACTIVITY= [http://en.wikipedia.org/wiki/Saccharopine_dehydrogenase_(NADP(+),_L-glutamate-forming) Saccharopine dehydrogenase (NADP(+), L-glutamate-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.1.10 1.5.1.10] | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Saccharopine_dehydrogenase_(NADP(+),_L-glutamate-forming) Saccharopine dehydrogenase (NADP(+), L-glutamate-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.1.10 1.5.1.10] </span> | ||
|GENE= LYS9, LYS13 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae]) | |GENE= LYS9, LYS13 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae]) | ||
|DOMAIN= | |||
|RELATEDENTRY=[[1e5l|1E5L]], [[1e5q|1E5Q]], [[1ff9|1FF9]] | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2axq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2axq OCA], [http://www.ebi.ac.uk/pdbsum/2axq PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2axq RCSB]</span> | |||
}} | }} | ||
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[[Category: Cook, P F.]] | [[Category: Cook, P F.]] | ||
[[Category: West, A H.]] | [[Category: West, A H.]] | ||
[[Category: alpha-aminoadipate pathway]] | [[Category: alpha-aminoadipate pathway]] | ||
[[Category: alpha/beta protein]] | [[Category: alpha/beta protein]] | ||
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[[Category: saccharopine reductase fold (domain ii)]] | [[Category: saccharopine reductase fold (domain ii)]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:58:42 2008'' | ||
Revision as of 22:58, 30 March 2008
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| 2axq, resolution 1.700Å | |||||||||||||
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| Ligands: | SO4 | ||||||||||||
| Gene: | LYS9, LYS13 (Saccharomyces cerevisiae) | ||||||||||||
| Activity: | Saccharopine dehydrogenase (NADP(+), L-glutamate-forming), with EC number 1.5.1.10 | ||||||||||||
| Related: | 1E5L, 1E5Q, 1FF9
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||||||
Apo histidine-tagged saccharopine dehydrogenase (L-Glu forming) from Saccharomyces cerevisiae
Overview
The three-dimensional structure of the saccharopine reductase enzyme from the budding yeast Saccharomyces cerevisiae was determined to 1.7-A resolution in the apo form by using molecular replacement. The enzyme monomer consists of three domains: domain I is a variant of the Rossmann fold, domain II folds into a alpha/beta structure containing a mixed seven-stranded beta-sheet as the central core, and domain III has an all-helical fold. Comparative fold alignment with the enzyme from Magnaporthe grisea suggests that domain I binds to NADPH, and domain II binds to saccharopine and is involved in dimer formation. Domain III is involved in closing the active site of the enzyme once substrates are bound. Structural comparison of the saccharopine reductase enzymes from S. cerevisiae and M. grisea indicates that domain II has the highest number of conserved residues, suggesting that it plays an important role in substrate binding and in spatially orienting domains I and III.
About this Structure
2AXQ is a Single protein structure of sequence from Saccharomyces cerevisiae. Full crystallographic information is available from OCA.
Reference
Crystal structure of the his-tagged saccharopine reductase from Saccharomyces cerevisiae at 1.7-A resolution., Andi B, Cook PF, West AH, Cell Biochem Biophys. 2006;46(1):17-26. PMID:16943620
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