2b3e: Difference between revisions
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|PDB= 2b3e |SIZE=350|CAPTION= <scene name='initialview01'>2b3e</scene>, resolution 1.36Å | |PDB= 2b3e |SIZE=350|CAPTION= <scene name='initialview01'>2b3e</scene>, resolution 1.36Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand= | |LIGAND= <scene name='pdbligand=DA:2'-DEOXYADENOSINE-5'-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DBN:6-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)-2-{5-[4-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)PHENYL]THIEN-2-YL}-1H-BENZIMIDAZOLE'>DBN</scene>, <scene name='pdbligand=DC:2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5'-MONOPHOSPHATE'>DT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene> | ||
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY=[[2dbe|2DBE]] | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2b3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3e OCA], [http://www.ebi.ac.uk/pdbsum/2b3e PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2b3e RCSB]</span> | |||
}} | }} | ||
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[[Category: Neidle, S.]] | [[Category: Neidle, S.]] | ||
[[Category: Parkinson, G N.]] | [[Category: Parkinson, G N.]] | ||
[[Category: a2t2]] | [[Category: a2t2]] | ||
[[Category: crystal structure of b-dna]] | [[Category: crystal structure of b-dna]] | ||
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[[Category: nucleic acid]] | [[Category: nucleic acid]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:00:53 2008'' | ||
Revision as of 23:00, 30 March 2008
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| 2b3e, resolution 1.36Å | |||||||||||||
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| Ligands: | DA, DBN, DC, DG, DT, MG | ||||||||||||
| Related: | 2DBE
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||||||
Crystal structure of DB819-D(CGCGAATTCGCG)2 complex.
Overview
The crystal structure of the DNA minor groove biphenyl benzimidazole diamidine ligand DB819 has been determined, bound to the DNA sequence d(CGCGAATTCGCG)(2), at a resolution of 1.36 Angstrom. Conditions for reliable in silico docking that reproduce the observed position of the ligand in the minor groove have been determined.
About this Structure
2B3E is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
Targeting the DNA minor groove with fused ring dicationic compounds: comparison of in silico screening and a high-resolution crystal structure., Campbell NH, Evans DA, Lee MP, Parkinson GN, Neidle S, Bioorg Med Chem Lett. 2006 Jan 1;16(1):15-9. Epub 2005 Nov 2. PMID:16263285
Page seeded by OCA on Mon Mar 31 02:00:53 2008
Proteopedia Page Contributors and Editors (what is this?)
- Pages with broken file links
- Protein complex
- Campbell, N H.
- Evans, D A.
- Lee, M P.
- Neidle, S.
- Parkinson, G N.
- A2t2
- Crystal structure of b-dna
- Db819
- Dickerson and drew dodecamer
- Dna
- Dna hydration.
- Dna minor
- Dna minor groove-ligand complex
- Dna-drug complex
- Double helix
- Groove binder
- Hydrated magnesium
- Magnesium-water complex
- Minor groove
- Nucleic acid
