Helicase: Difference between revisions

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Michal Harel (talk | contribs)
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Line 175: Line 175:
**[[2p6n]] – hDDX41 helicase domain (mutant) <BR />
**[[2p6n]] – hDDX41 helicase domain (mutant) <BR />
**[[2e29]], [[2m3d]] - hDDX50 GUCT domain - NMR<BR />
**[[2e29]], [[2m3d]] - hDDX50 GUCT domain - NMR<BR />
**[[2rqa]] – hDHX58 C terminal – NMR<BR />
**[[3eqt]] - hDHX58 C terminal + RNA<BR />
**[[2eqs]] – hDHX8 S1 domain<BR />
**[[3i4u]]– hDHX8 residues 950-1183<br />
**[[1vec]] – hP54 N terminal<BR />
**[[1vec]] – hP54 N terminal<BR />
**[[2hjv]] – BsDBPA domain 2 – ''Bacillus subtilis''<BR />
**[[2hjv]] – BsDBPA domain 2 – ''Bacillus subtilis''<BR />
Line 200: Line 196:
**[[3i62]] - yMSS116 + ADP + AlF4 + RNA<BR />
**[[3i62]] - yMSS116 + ADP + AlF4 + RNA<BR />
**[[4tyn]] - yMSS116 + ADP + DNA<br />
**[[4tyn]] - yMSS116 + ADP + DNA<br />
**[[2xau]], [[3kx2]], [[5jpt]] – yPRP43 + nucleotide<BR />
**[[2xau]], [[3kx2]], [[5jpt]] – yPrp43 + nucleotide<BR />
**[[5i8q]] - yPRP43 + ADPNP + RNA<br />
**[[5i8q]] - yPrp43 + ADPNP + RNA<br />
**[[5ltk]], [[5ltj]], [[5ltk]], [[5d0u]] - CtPRP43 + ADP – ''Chaetomium thermophilum''<br />
**[[5ltk]], [[5ltj]], [[5d0u]] - CtPrp43 + ADP – ''Chaetomium thermophilum''<br />
**[[5lta]] - CtPRP43 + ADP + RNA<br />
**[[5lta]] - CtPrp43 + ADP + RNA<br />
**[[3jrv]] – DDX3X + protein K7 – Vaccinia virus<BR />
**[[3jrv]] – DDX3X + protein K7 – Vaccinia virus<BR />
**[[3fmo]], [[3fhc]] – hDBP5 + Nup214<BR />
**[[3fmo]], [[3fhc]] – hDBP5 + Nup214<BR />
Line 212: Line 208:
**[[5e7m]], [[5e7j]] – hDDX3X catalytic domain + nucleotide<br />
**[[5e7m]], [[5e7j]] – hDDX3X catalytic domain + nucleotide<br />
**[[3dkp]] – hDDX52 domain I + ADP<BR />
**[[3dkp]] – hDDX52 domain I + ADP<BR />
**[[5e3h]] - hDHX58 residues 232-925 + RNA<br />
**[[2wax]], [[2way]] – hDDX6 C terminal + EDC3-FDF peptide<BR />
**[[2wax]], [[2way]] – hDDX6 C terminal + EDC3-FDF peptide<BR />
**[[2j0s]], [[2j0q]], [[2hyi]] – hDDX48 + protein mago nashi homolog + RNA-binding protein 8A + protein CASC3 + RNA<BR />
**[[2j0s]], [[2j0q]], [[2hyi]] – hDDX48 + protein mago nashi homolog + RNA-binding protein 8A + protein CASC3 + RNA<BR />
Line 219: Line 214:
**[[3nbf]] - TtHera N terminal (mutant) + 8-oxo-ADP<br />
**[[3nbf]] - TtHera N terminal (mutant) + 8-oxo-ADP<br />
**[[3moj]] - BsDBPA RNA-binding domain + RNA
**[[3moj]] - BsDBPA RNA-binding domain + RNA
* DEAH box RNA helicase
**[[2eqs]] – hDHX8 S1 domain<br />
**[[3i4u]] – hDHX8 residues 950-1183<br />
**[[3llm]] – hDHX9<br />
**[[2rs6]], [[2rs7]] – DHX9 RNA-binding domain – mouse – NMR<br />
**[[5xdr]] – hDHX15 residues 110-795 (mutant)<br />
**[[2n16]] – hDHX36 G-quadruplex domain - NMR<br />
**[[2rqa]] – hDHX58 C terminal – NMR<br />
**[[3vyx]], [[3vyy]] – hDHX9 RNA-binding domain + RNA<br />
**[[2n21]] – hDHX36 G-quadruplex domain + DNA - NMR<br />
**[[5e3h]] - hDHX58 residues 232-925 + RNA<br />
**[[3eqt]]- hDHX58 residues 541-678 + RNA<br />


*ATP-dependent RNA helicase
*ATP-dependent RNA helicase
Line 388: Line 397:
**[[5lus]] – BLM DHBN domain - pelican<br />
**[[5lus]] – BLM DHBN domain - pelican<br />
**[[5lup]] – hBLM DHBN domain <br />
**[[5lup]] – hBLM DHBN domain <br />
*Helicase CA8 or Prp28
**[[4w7s]] – yCa8<br />


*Helicase NSP2
*Helicase NSP2
Line 425: Line 438:
**[[3hib]], [[3im1]], [[3im2]] – yBrr2 2nd SEC63 domain<br />
**[[3hib]], [[3im1]], [[3im2]] – yBrr2 2nd SEC63 domain<br />
**[[4bgd]], [[5m5p]], [[5m52]], [[5dca]] – yBrr2 + pre-mRNA-splicing factor 8<br />
**[[4bgd]], [[5m5p]], [[5m52]], [[5dca]] – yBrr2 + pre-mRNA-splicing factor 8<br />
**[[4w7s]] – yCa8<br />


*crispr-associated helicase Cas3
*crispr-associated helicase Cas3