Jmol/Visualizing membrane position: Difference between revisions
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<scene name='78/784276/Opm2/7'>When we apply</scene> a <font color="#909090"><b>hydrophobic</b></font> vs. <font color="magenta"><b>polar</b></font> color scheme, the protein within the lipid bilayer is seen to have a largely hydrophobic surface. The example used here is [[5lil]]. | <scene name='78/784276/Opm2/7'>When we apply</scene> a <font color="#909090"><b>hydrophobic</b></font> vs. <font color="magenta"><b>polar</b></font> color scheme, the protein within the lipid bilayer is seen to have a largely hydrophobic surface. The example used here is [[5lil]]. | ||
==Methods== | ==Methods: Pseudoatoms== | ||
Any protein structure that includes an integral membrane domain can have pseudoatoms added to the [[PDB file]] by the [http://opm.phar.umich.edu/ Orientations of Proteins in Membranes Server]<ref name="opm">PMID: 21890895</ref>. | |||
</StructureSection> | </StructureSection> | ||
== References == | == References == | ||
<references/> | <references/> | ||
