Jmol/Visualizing membrane position: Difference between revisions
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==Methods: Pseudoatoms== | ==Methods: Pseudoatoms== | ||
Any protein structure that includes an integral membrane domain can have pseudoatoms added to the [[PDB file]] by the [http://opm.phar.umich.edu/ Orientations of Proteins in Membranes Server]<ref name="opm">PMID: 21890895</ref>. | Any protein structure that includes an integral membrane domain can have pseudoatoms added to the [[PDB file]] by the [http://opm.phar.umich.edu/ Orientations of Proteins in Membranes Server]<ref name="opm">PMID: 21890895</ref>. Structures in the [[Protein Data Bank]] are pre-processed; other structures may be uploaded to the server. The server removes hydrogen atoms from the model. | ||
You can download the pseudoatom-enhanced PDB file from the server, and then [[Help:Uploading_molecules|upload it to Proteopedia]] for use in a ''Molecular Scene''. | |||
</StructureSection> | </StructureSection> | ||
== References == | == References == | ||
<references/> | <references/> | ||
