User:Wayne Decatur/Structure analysis tools: Difference between revisions

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* Curves+ is a revised version of the Curves approach for analyzing the structure of nucleic acids. The webserver form can be accessed [http://curvesplus.bsc.es/ here] where citations of the related articles are in another tab. There seems to be a command line-based one in Fortran available [https://bisi.ibcp.fr/tools/curves_plus/curves-user-guide.html here].
* Curves+ is a revised version of the Curves approach for analyzing the structure of nucleic acids. The webserver form can be accessed [http://curvesplus.bsc.es/ here] where citations of the related articles are in another tab. There seems to be a command line-based one in Fortran available [https://bisi.ibcp.fr/tools/curves_plus/curves-user-guide.html here].


* DSSR -(Dissecting the Spatial Structure of RNA), an integrated and automated tool for analyzing and annotating RNA tertiary structures. [http://www.ncbi.nlm.nih.gov/pubmed/?term=DSSR%3A+an+integrated+software+tool+for+dissecting+the+spatial+structure+of+RNA PMID: 26184874 ]<ref>PMID: 26184874</ref>  (Maybe name of given supplemental data file previously DSSR stood for "DSSR_ a software program for Defining the Secondary Structures of RNA from three-dimensional coordinates".? [[Jmol]] now has integrated real time updates to data generated by DSSR, see [https://www.google.com/search?q=jmol+dssr&oq=jmol+dssr&aqs=chrome.0.69i59j69i60.4221j0j7&sourceid=chrome&es_sm=91&ie=UTF-8 here] and [https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkx365 a 2017 article on it here]<ref>PMID: 28472503</ref>.
* Despite what the name original stood for, DSSR handles nucleic acids in general as well. See the description below for links.
* RNApdbee -a webserver to derive secondary structures from PDB files of knotted and unknotted RNAs [http://www.ncbi.nlm.nih.gov/pubmed/24771339 PMID: 24771339]<ref>PMID: 24771339</ref>. Use it [http://rnapdbee.cs.put.poznan.pl/ here].




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