Introduction to molecular visualization: Difference between revisions
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The above features can be most easily displayed in the ''Views'' tab of [[FirstGlance in Jmol]]. Evolutionary conservation can sometimes be seen with [[How to see conserved regions|one click in Proteopedia]], or in other cases requires [[ConSurf Quick Analysis Procedure|submitting a job to the ConSurf server]]. For a specific protein, such features can be displayed by using Proteopedia's [[Scene Authoring Tools]] and then attached to green links when authoring a page. | The above features can be most easily displayed in the ''Views'' tab of [[FirstGlance in Jmol]]. Evolutionary conservation can sometimes be seen with [[How to see conserved regions|one click in Proteopedia]], or in other cases requires [[ConSurf Quick Analysis Procedure|submitting a job to the ConSurf server]]. For a specific protein, such features can be displayed by using Proteopedia's [[Scene Authoring Tools]] and then attached to green links when authoring a page. | ||
===Covalent and Non-Covalent | ===Covalent and Non-Covalent Interactions=== | ||
[[FirstGlance in Jmol]] provides "one-click" routines, in its ''Tools'' tab, to highlight | [[FirstGlance in Jmol]] provides "one-click" routines, in its ''Tools'' tab, to highlight | ||
*Disulfide bonds | *Disulfide bonds | ||
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*[[Cation-pi interactions]] | *[[Cation-pi interactions]] | ||
*Non-covalent interactions with any substructure that you select, using ''Contacts & Non-Covalent Interactions'' in the ''Tools'' tab. | *Non-covalent interactions with any substructure that you select, using ''Contacts & Non-Covalent Interactions'' in the ''Tools'' tab. | ||
*Distances between any two atoms, and angles or dihedral angles defined by 3 or 4 atoms, using ''Distances/Angles'' in the ''Tools'' tab. | |||
*[[Crystal contacts]]. | |||
==See Also== | ==See Also== | ||
