2oyk: Difference between revisions

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|PDB= 2oyk |SIZE=350|CAPTION= <scene name='initialview01'>2oyk</scene>, resolution 1.500&Aring;
|PDB= 2oyk |SIZE=350|CAPTION= <scene name='initialview01'>2oyk</scene>, resolution 1.500&Aring;
|SITE=  
|SITE=  
|LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=9MR:(3R,4R,5R)-3-HYDROXY-5-(HYDROXYMETHYL)PIPERIDIN-4-YL+BETA-D-GLUCOPYRANOSIDE'>9MR</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
|LIGAND= <scene name='pdbligand=9MR:(3R,4R,5R)-3-HYDROXY-5-(HYDROXYMETHYL)PIPERIDIN-4-YL+BETA-D-GLUCOPYRANOSIDE'>9MR</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
|ACTIVITY= [http://en.wikipedia.org/wiki/Endoglycosylceramidase Endoglycosylceramidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.123 3.2.1.123]  
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Endoglycosylceramidase Endoglycosylceramidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.123 3.2.1.123] </span>
|GENE=  
|GENE=  
|DOMAIN=
|RELATEDENTRY=
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyk OCA], [http://www.ebi.ac.uk/pdbsum/2oyk PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2oyk RCSB]</span>
}}
}}


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[[Category: Caines, M E.C.]]
[[Category: Caines, M E.C.]]
[[Category: Strynadka, N C.J.]]
[[Category: Strynadka, N C.J.]]
[[Category: 9MR]]
[[Category: GOL]]
[[Category: NA]]
[[Category: (alpha/beta)8 (tim) barrel]]
[[Category: (alpha/beta)8 (tim) barrel]]
[[Category: hydrolase]]
[[Category: hydrolase]]


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 23 15:35:46 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:25:10 2008''

Revision as of 01:25, 31 March 2008

File:2oyk.jpg


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2oyk, resolution 1.500Å
Ligands: 9MR, GOL, NA
Activity: Endoglycosylceramidase, with EC number 3.2.1.123
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml



Endo-glycoceramidase II from Rhodococcus sp.: cellobiose-like isofagomine complex


About this Structure

2OYK is a Single protein structure of sequence from Rhodococcus sp.. Full crystallographic information is available from OCA.

Reference

The structural basis of glycosidase inhibition by five-membered iminocyclitols: the clan a glycoside hydrolase endoglycoceramidase as a model system., Caines ME, Hancock SM, Tarling CA, Wrodnigg TM, Stick RV, Stutz AE, Vasella A, Withers SG, Strynadka NC, Angew Chem Int Ed Engl. 2007;46(24):4474-6. PMID:17487923

Page seeded by OCA on Mon Mar 31 04:25:10 2008

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