Sandbox 1742: Difference between revisions

Revision as of 09:50, 8 October 2018

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 == Representations==
-<scene name='79/796888/Peptide-1-ball-and-stick/2'>Ball-and-stick</scene> is the same as the default representation above, but just an end-on orientation of the peptide.
+Ball and stick representations:  <scene name='79/796888/Peptide-1-ball-and-stick/2'>with side chains</scene>, or <scene name='79/796888/Peptide-1-ball-and-stick/3'>with protein backbone only</scene>
-<scene name='79/796888/Peptide-1-backbone-b-and-s/2'>Protein backbone</scene> is another representation that is useful for viewing just the backbone atoms of peptides and proteins.
+Space fill representations: <scene name='79/796888/Peptide-1-ball-and-stick/4'>with side chains</scene>, or <scene name='79/796888/Peptide-1-ball-and-stick/5'>with protein backbone only</scene>
-The <scene name='79/796888/Peptide-1-backbone-b-and-s/3'>spacefill</scene> representation more accurately represents the space occupied by the electron cloud of each of the atoms.  This representation only shows the spacefill of the heteroatoms of the protein backbone, and starts from an end-on orientation.
+Ribbon representation:   <scene name='79/796888/Peptide-1-backbone-b-and-s/5'>with protein backbone only</scene>
-A <scene name='79/796888/Peptide-1-backbone-b-and-s/5'>ribbon</scene> representation is a more simplified rendering that is often used to trace the backbone location in large protein structures.
 == Displaying Hydrogen Bonds ==