Sandbox 1742: Difference between revisions

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== Displaying Hydrogen Bonds ==
== Displaying Hydrogen Bonds ==
Be sure to go back to a representation of this Model that will allow you to see which atoms are WITHIN one water molecule and which atoms are in DIFFERENT water molecules.
Let's view the hydrogen bonds that can be calculated from optimal distances/angles in this structure:  for the structure with side chains, or with protein backbone only. Use one of these representations to measure the distances necessary to complete the table in your activity.
Once you have selected a representation (by clicking on one of the green text options in the "Representations" section above), to measure distances between two atoms you can follow these steps:
 
== Measuring Distances Between Atoms ==


== A Reminder on Measuring Distances Between Atoms ==
*Put your cursor in the structure window.
*Put your cursor in the structure window.
*Decide on two atoms for which you would like to measure the distance between them.
*Decide on two atoms for which you would like to measure the distance between them.
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