Antibody 3D structures: Difference between revisions

**[[3naa]], [[3nab]], [[3nac]], [[3ncj]], [[3o2v]], [[3hc3]], [[3hc4]] - hFab (mutant)<br />

**[[6b0w]], [[6azx]], [[5bk5]], [[5bk3]] - hFab anti-circumsporozoite<br />

**[[3i75]], [[1nqb]], [[1f4w]], [[1aif]], [[1ghf]], [[2z91]], [[1ind]], [[3bkc]], [[3bkm]], [[1iy0]], [[3pp3]], [[3pp4]], [[3okm]], [[6fab]], 2hkh]], [[1ay1]], [[1nbv]], [[1qbm]], [[1bbd]], [[1dsf]], [[1gpo]], [[1mnu]], [[1igf]], [[1for]], [[1k6q]], [[1bz7]], [[1dqd]], [[2ipt]], [[2iq9]], [[2iqa]], [[2w60]], [[2w9d]], [[3iu4]], [[1q9k]], [[1q9l]], [[1q9o]], [[2z4q]], [[1cl7]], [[1cr9]], [[1r24]], [[1gig]], [[1uyw]], [[1cgs]], [[2cgr]], [[1q0x]], [[1ibg]], [[3eo0]], [[2op4]], [[2q76]], [[2ojz]], [[2g60]], [[2dbl]], [[1dbj]], [[1dbk]], [[1dbm]], [[1dba]], [[1mrc]], [[2gcy]], [[1flr]], [[1uz6]], [[1rfd]], [[1t2q]], [[1ggb]], [[1ggc]], [[1bm3]], [[2eh7]], [[2fat]], [[3cfc]], [[1fl3]], [[3cfe]], [[4j1u]], [[4gq9]], [[3qg7]], [[3rvt]], [[3s62]], [[4gay]], [[5mx3]], [[5l88]], [[5i66]], [[5cma]], [[5az2]], [[4z0b]], [[4qth]], [[4poz]], [[5vzr]], [[5lgh]], [[5l9d]], [[5l7x]], [[5h2b]], [[4lci]], [[4k23]] - mFab – mouse<br />

**[[1jpt]], [[3mxv]], [[2o5x]], [[1ucb]], [[1bbj]], [[1t04]], [[2fgw]], [[1fvd]], [[1fve]], [[4kuz]] - hmFab <br />

**[[1cqk]] – mFab MAK33 CH3 domain<br />

**[[3mj8]], [[3r06]] – AhFab – Armenian hamster<br />

**[[3iy1]], [[1zan]] – raFab – rat<br />

**[[4k3e]], [[4k3d]] – bFab – bovine<br />

**[[4b41]], [[4m3j]] – LgFab – ''Lama glama''<br />

*Anti-HIV Fab

**[[4ptu]], [[4hih]] – hFab + rhamnose<br />

**[[1ikf]] – hFab R45 + cyclosporin<br />

**[[6n35]], [[6n2x]], [[5i8o]] - hFab + polysaccharide<br />

**[[3csy]] - hFab + Ebola envelope glycoprotein peptide<br />

**[[4hs8]], [[5kzp]] – hFab + hepatitis virus peptide <br />

*Other Fab: peptide complex

**[[5dmg]] – rFab + microtubule-associated protein peptide - rabbit<br />

**[[5dd0]] – rmFab + peptide<br />

*Anti-HIV Fab: peptide complex

**[[3b2u]], [[3b2v]] – hFab IMC-11F8 + EGFR<br />

**[[2r0k]], [[2r0l]] – hFab + HGFA<br />

**[[3kr3]] – hFab + IGF-II<br />

**[[3g6d]] – hFab CNTO607 + IL-13<br />

**[[3g6j]] – hFab + complement C3<br />

**[[2wub]], [[3k2u]] – hFab 40 + hepatocyte growth factor activator<br />

**[[3grw]] - hFab + fibroblast growth factor receptor<br />

**[[3bdy]], [[2qr0]], [[2fjg]], [[2fjh]], [[1cz8]], [[5fv2]], [[5fv1]] – hFab + VEGF<br />

**[[3bqu]] – hFab 2F5 anti-HIV + mFab 3H6<br />

**[[3skj]] – hFab + ephrin receptor<br />

**[[3sob]] – hFab + LPR6<br />

**[[5kn5]] - hFab + protransforming growth factor alpha<br />

**[[5c8j]] – hFab + protein MJ0480<br />

**[[2qqk]], [[2qql]], [[2qqn]] – hFab + neuropilin<br />

**[[2vyr]] – hFab + MDM4<br />

**[[6b0h]], [[6b0g]], [[6b0e]], [[6b0a]], [[6b08]], [[6azz]] - hFab + PFS25 <br />

**[[6aod]] - hFab + coagulation factor <br />

**[[4hj0]] - hFab + GIPR <br />

**[[4g80]], [[4g7y]], [[4g7v]] - hFab + VSP <br />

*Mouse Fab: protein complex

**[[3o0r]], [[5gux]] – mFab + nitric oxide reductase<br />

**[[1ahw]] - mFab 5G9+ tissue factor<br />

**[[2w9e]], [[1tpx]], [[1tqb]], [[1tqc]] – mFAB + major prion protein<br />

**[[2oz4]] – mFab + intercellular adhesion molecule<br />

**[[2jel]] – mFab JEL42 + histidine-containing protein<br />

**[[1nsn]] – mFab N10 + nuclease<br />

**[[1nfd]] – mFab H57 + T-cell receptor<br />

**[[1igc]] – mFab MOPC21 + streptococcal protein G<br />

**[[1iai]] – mFab idiotipic + mFab anti-idiotypic<br />

**[[2r8s]] – mFab + RNA<br />

**[[1mhp]], [[3q3g]], [[3qa3]] – mFab  + integrin<br />

**[[3etb]] – mFab M18 (mutant) + anthrax-protective antigen<br />

**[[5e94]] – mFab + glucagon-like receptor <br />

**[[5e8d]] – mFab + proepiregulin <br />

**[[5fb8]] - mFab + interleukin<br />

**[[5d96]], [[5d93]] - mFab + sulfhydryl oxidase<br />

**[[4oii]] - mFab + NS1<br />

**[[3fmg]] – mFab + glycoprotein VP7<br />

**[[5ldn]] – mFab + hexon C5<br />

**[[4l5f]]  – mFab + dengue virus envelope protein <br />

**[[3mac]], [[3ma9]] – hFab anti-HIV 8062 + transmembrane glycoprotein<br />

**[[4xak]] – hFab anti-HIV M336 + spike glycoprotein<br />

**[[5v7j]], [[4j6r]] - hFab anti-HIV + gp160<br />

**[[4xnz]], [[4xny]], [[4xmp]] - hFab anti-HIV + gp41<br />

**[[1pkq]] – hmFab 8-18C5 + myelin glycoprotein<br />

**[[2b2x]] – rFab AQC2 + integrin<br />

**[[2r56]] – bFab igE + β-lactoglobulin <br />

**[[1g6v]] – bFab + carbonic anhydrase<br />

**[[4hgk]] – Fab + albumin – shark<br />

**[[4n9g]] - rmFab + scaffold<br />

*Human Fab: protein higher complexes

**[[3bt2]] – hFab anti-UPAR + urokinase-type plasminogen activator + vitronectin<br />

**[[3gjf]], [[3hae]] – hFab + β-2-microglobulin + MHC antigen + NYESO peptide<br />

**[[1g9m]], [[1g9n]], [[1gc1]], [[2i5y]], [[2i60]], [[2nxy]], [[2nxz]], [[2ny0]], [[2ny1]], [[2ny2]], [[2ny3]], [[2ny4]], [[2ny5]], [[2ny6]], [[3jwd]], [[3jwo]], [[5a8h]], [[5a7x]], [[4r4h]], [[4h8w]] - hFab anti-HIV + envelope glycoprotein gp120 + CD4<br />

**[[3ixx]], [[3ixy]] - mFab E53 + envelope glycoprotein + West Nile virus peptide<br />

**[[5w3e]], [[5w3l]], [[5w3m]], [[5w3o]], [[5w3p]] - mFab C5 + Rhinovirus protein 1 + protein 2 + protein 3 + protein 4<br />

**[[3or6]], [[3or7]], [[3ogc]], [[3fb7]], [[3f7v]], [[3f7y]], [[3fb5]], [[3fb6]], [[3fb8]], [[3iga]], [[2itc]], [[2itd]], [[2nlj]], [[2bob]], [[2boc]], [[1s5h]], [[1r3i]], [[1r3j]], [[1r3k]], [[1r3l]], [[1k4c]], [[1k4d]], [[3hpl]] - mFab + KcsA K+ channel (mutant) + ion<br />

**[[2fd6]] – mFab ATN-615 + urokinase-type plasminogen activator + urokinase plasminogen receptor<br />

**[[5jyl]], [[5jym]] – mscFv + cadherin<br />

**[[5f3j]] – mscFv + duffy receptor<br />

**[[2kh2]] – mscFv + IL-1 - NMR<br />

**[[4yqx]] – mscFv + IL-2<br />

**[[3h3b]] – mscFv + ERBB2<br />

**[[5ogi]] – mscFv + hexon protein <br />

**[[4f9p]], [[4f9l]] – mscFv + BTN3A1<br />

**[[5aam]], [[5aaw]] – mscFv + Dengue virus envelope protein<br />

**[[4h0h]], [[5fxc]], [[5owp]], [[1ktr]] – mscFv + peptide<br />

**[[5i0z]], [[5c6w]] – hVHH <br />

**[[1g9e]] – LgVHH - NMR<br />

**[[4u05]] – LgVHH (mutant)<br />

**[[3r0m]] – LgVHH anti-HIV<br />

**[[2xxc]] – ViVHH anti-HIV - vicuna<br />

**[[5u64]], [[5u65]], [[1f2x]], [[1yc7]], [[5e7b]], [[5m7q]], [[5jmr]], [[3dwt]], [[3tpk]], [[3ln9]] – cVHH - camel<br />

**[[1yc8]], [[3eak]] – cVHH (mutant)<br />

**[[5nqw]] – LgVHH + IGE-FC<br />

**[[4hep]], [[4hem]] – LgVHH + BPP<br />

**[[6ana]], [[6and]], [[6ani]] – LgVHH + mouse antibody<br />

**[[4krl]], [[4krm]] – LgVHH + EGFR<br />

**[[4p2c]] – LgVHH + Shiga toxin<br />

**[[4aq1]] – LgVHH + SBSB<br />

**[[1jto]], [[1jtp]], [[1jtt]], [[1ri8]], [[1xfp]], [[1zmy]], [[1zv5]], [[1zvh]], [[4i0c]], [[1op9]], [[1mel]], [[1rjc]], [[1zvy]] – cVHH + lysozyme<br />

**[[2x89]] – cVHH + β-2-microglobulin<br />

**[[5hgg]], [[5lhr]], [[5lhq]], [[5lhp]], [[5lhn]] – ViVHH + urokinase-type plasminogen activator <br />

**[[5vxm]], [[5vxj]], [[5vxk]], [[5vxl]], [[5vlj]] - ViVHH + invasion IpaD<br />

*VHH ternary complexes

**[[5fuc]] – cVHH + IL-6 + IL-6 receptor<br />

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