Cellobiohydrolase: Difference between revisions

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The <scene name='48/488493/Cv/6'>active site</scene> of CBH contains <scene name='48/488493/Cv/7'>Glu-Asp-Glu</scene> (Gln-Asp-Glu in [[3cel]], cyan) and is situated at the <scene name='48/488493/Cv/9'>bottom of a tunnel</scene>.<ref>PMID:8951380</ref> Water molecules shown as red spheres.
The <scene name='48/488493/Cv/6'>active site</scene> of CBH contains <scene name='48/488493/Cv/7'>Glu-Asp-Glu</scene> (Gln-Asp-Glu in [[3cel]], cyan) and is situated at the <scene name='48/488493/Cv/9'>bottom of a tunnel</scene>.<ref>PMID:8951380</ref> Water molecules shown as red spheres.
==3D structures of cellobiohydrolase==
[[Cellobiohydrolase 3D structures]]
</StructureSection>
</StructureSection>
==3D structures of cellobiohydrolase==
==3D structures of cellobiohydrolase==
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**[[1cel]], [[4p1h]], [[4p1j]], [[5tc9]] – HjCBHI Cel7A catalytic domain – ''Hypocrea jecorina''<BR />
**[[1cel]], [[4p1h]], [[4p1j]], [[5tc9]] – HjCBHI Cel7A catalytic domain – ''Hypocrea jecorina''<BR />
**[[2cel]], [[4cel]], [[1egn]], [[1q2b]] - HjCBHI catalytic domain (mutant) <BR />
**[[2cel]], [[4cel]], [[1egn]], [[1q2b]], [[5oa5]] - HjCBHI catalytic domain (mutant) <BR />
**[[1cbh]], [[2cbh]], [[5x34]], [[5x35]], [[5x36]], [[5x37]], [[5x38]] – HjCBHI C terminal – NMR<BR />
**[[1cbh]], [[2cbh]], [[5x34]], [[5x35]], [[5x36]], [[5x37]], [[5x38]] – HjCBHI C terminal – NMR<BR />
**[[5x3c]] – HjCBHI C terminal (mutant) – NMR<br />
**[[5x3c]], [[5x39]] – HjCBHI C terminal (mutant) – NMR<br />
**[[1azh]], [[1az6]], [[1azj]], [[1azk]] - HjCBHI cellulose-binding domain (mutant) - NMR<BR />
**[[1azh]], [[1az6]], [[1azj]], [[1azk]] - HjCBHI cellulose-binding domain (mutant) - NMR<BR />
**[[1gpi]] - PcCBHI Cel7D catalytic domain – ''Phanerochaete chrysosporium''<BR />
**[[1gpi]] - PcCBHI Cel7D catalytic domain – ''Phanerochaete chrysosporium''<BR />
Line 28: Line 32:
**[[4zzv]], [[5amp]] - GcCBHI Cel7A catalytic domain – ''Galactomyces candidum''<br />
**[[4zzv]], [[5amp]] - GcCBHI Cel7A catalytic domain – ''Galactomyces candidum''<br />
**[[2mwk]], [[2mwj]] - TrCBHI Cel7A carbohydrate-binding module 1 domain – ''Trichoderma reesei''<br />
**[[2mwk]], [[2mwj]] - TrCBHI Cel7A carbohydrate-binding module 1 domain – ''Trichoderma reesei''<br />
**[[4v1z]] – AfCBH Cel7A – ''Aspergillus fumigatus''<br />


*''Cellobiohydrolase I binary complex''
*''Cellobiohydrolase I binary complex''
Line 37: Line 42:
**[[7cel]] - HjCBHI catalytic domain (mutant) + glucose<br />
**[[7cel]] - HjCBHI catalytic domain (mutant) + glucose<br />
**[[2v3i]], [[2v3r]] - HjCBHI Cel7A catalytic domain + phenanthrenolol<br />
**[[2v3i]], [[2v3r]] - HjCBHI Cel7A catalytic domain + phenanthrenolol<br />
**[[1dy4]] - TrCBHI Cel7A catalytic domain + propranolol <BR />
**[[1dy4]], [[6grn]] - TrCBHI Cel7A catalytic domain + propranolol derivative<BR />
**[[4v0z]] - TrCBH Cel7A catalytic domain + cellobiose<br />
**[[4vwt]] - TrCBH Cel7A (mutant) catsalytic domain + cellobiose<br />
**[[4c4c]] - TrCBHI Cel7A catalytic domain (mutant) + cellononaose <br />
**[[4c4c]] - TrCBHI Cel7A catalytic domain (mutant) + cellononaose <br />
**[[4c4d]], [[4d5i]], [[4d5j]] - TrCBHI Cel7A catalytic domain (mutant) + cellotrioside <br />
**[[4c4d]], [[4d5i]], [[4d5j]] - TrCBHI Cel7A catalytic domain (mutant) + cellotrioside <br />
**[[1h46]] - PcCBHI Cel7D catalytic domain + propranolol<br />
**[[1z3t]] - PcCBHI Cel7D catalytic domain + cellobiose<br />
**[[1z3v]] - PcCBHI Cel7D catalytic domain + lactose<br />
**[[1z3w]] - PcCBHI Cel7D catalytic domain + cellobioimidazole<BR />
**[[3pfx]] - TeCBHI Cel7A catalytic domain + cellobiose<br />
**[[3pfx]] - TeCBHI Cel7A catalytic domain + cellobiose<br />
**[[3pfz]] - TeCBHI Cel7A catalytic domain + cellotetraose + cellobiose<br />
**[[3pfz]] - TeCBHI Cel7A catalytic domain + cellotetraose + cellobiose<br />
Line 53: Line 56:
**[[5o5d]] - HaCBHI Cel7A catalytic domain – ''Hypocrea atroviridis''<br />
**[[5o5d]] - HaCBHI Cel7A catalytic domain – ''Hypocrea atroviridis''<br />
**[[5o59]] - HaCBHI Cel7A catalytic domain + glucose <br />
**[[5o59]] - HaCBHI Cel7A catalytic domain + glucose <br />
**[[4v20]] - AfCBH Cel7A catalytic domain + disaccharide<br />
**[[1h46]] - PcCBHI Cel7D catalytic domain + propranolol<br />
**[[1z3t]] - PcCBHI Cel7D catalytic domain + cellobiose<br />
**[[1z3v]] - PcCBHI Cel7D catalytic domain + lactose<br />
**[[1z3w]] - PcCBHI Cel7D catalytic domain + cellobioimidazole<BR />


*Cellobiohydrolase II or Cellobiohydrolase Cel6A or exoglucanase 2
*Cellobiohydrolase II or Cellobiohydrolase Cel6A or exoglucanase 2
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**[[1qk0]] - TrCBHII Cel6A catalytic domain + polysaccharide<BR />
**[[1qk0]] - TrCBHII Cel6A catalytic domain + polysaccharide<BR />
**[[1qk2]] - TrCBHII Cel6A catalytic domain + cellotetraose<br />
**[[1qk2]] - TrCBHII Cel6A catalytic domain + cellotetraose<br />
**[[4a05]] - CBHII Cel6A catalytic domain + cellotetraose – ''Chaetonium thermophilum''<br />


*Other cellobiohydrolases
*Other cellobiohydrolases
Line 83: Line 92:
**[[3a64]], [[3vog]] - CcCBH Cel6C catalytic domain - ''Coprinopsis cinerea''<BR />
**[[3a64]], [[3vog]] - CcCBH Cel6C catalytic domain - ''Coprinopsis cinerea''<BR />
**[[3vof]], [[3voj]] - CcCBHI Cel6C catalytic domain (mutant)<br />
**[[3vof]], [[3voj]] - CcCBHI Cel6C catalytic domain (mutant)<br />
**[[4v1z]] – AfCBH Cel7A – ''Aspergillus fumigatus''<br />
**[[2mte]] – CBH CelS residues 673-741 – ''Ruminiclostridium thermocellum'' - NMR<br />
**[[2mte]] – CBH CelS residues 673-741 – ''Ruminiclostridium thermocellum'' - NMR<br />


Line 90: Line 98:
**[[1l2a]] - CtCBH CelS + glucose<br />
**[[1l2a]] - CtCBH CelS + glucose<br />
**[[2ebs]] – GgCBH (mutant) + heptasaccharide<BR />
**[[2ebs]] – GgCBH (mutant) + heptasaccharide<BR />
**[[4avn]] - CBH Cel6B + cellobiose – Thermobifidia fusca<br />
**[[3a9b]], [[3voh]] - CcCBHI Cel6C catalytic domain + cellobiose<br />
**[[3a9b]], [[3voh]] - CcCBHI Cel6C catalytic domain + cellobiose<br />
**[[3abx]], [[3voi]] - CcCBHI Cel6C catalytic domain + cellotriose<br />
**[[3abx]], [[3voi]] - CcCBHI Cel6C catalytic domain + cellotriose<br />
**[[4v20]] - AfCBH Cel7A + disaccharide<br />
**[[4v20]] - AfCBH Cel7A + disaccharide<br />
**[[4v0z]] - TrCBH Cel7A + cellobiose<br />
**[[4vwt]] - TrCBH Cel7A (mutant) + cellobiose<br />


}}
}}

Revision as of 09:44, 5 May 2019

Glycosylated cellobiohydrolase I catalytic domain complex with cellobiose and Cd+2 ions (PDB code 3cel)

Drag the structure with the mouse to rotate

3D structures of cellobiohydrolase

Updated on 05-May-2019

  • Cellobiohydrolase I binary complex
    • 3cel, 4uwt - HjCBHI Cel7A catalytic domain (mutant) + cellobiose
    • 5cel, 1q2e, 4d5v - HjCBHI Cel7A catalytic domain (mutant) + cellotetraose
    • 4d5q - HjCBHI Cel7A catalytic domain + cellopentaose
    • 6cel, 4d5o, 4d5p - HjCBHI Cel7A catalytic domain (mutant) + cellopentaose
    • 7cel - HjCBHI catalytic domain (mutant) + glucose
    • 2v3i, 2v3r - HjCBHI Cel7A catalytic domain + phenanthrenolol
    • 1dy4, 6grn - TrCBHI Cel7A catalytic domain + propranolol derivative
    • 4v0z - TrCBH Cel7A catalytic domain + cellobiose
    • 4vwt - TrCBH Cel7A (mutant) catsalytic domain + cellobiose
    • 4c4c - TrCBHI Cel7A catalytic domain (mutant) + cellononaose
    • 4c4d, 4d5i, 4d5j - TrCBHI Cel7A catalytic domain (mutant) + cellotrioside
    • 3pfx - TeCBHI Cel7A catalytic domain + cellobiose
    • 3pfz - TeCBHI Cel7A catalytic domain + cellotetraose + cellobiose
    • 3pl3 - TeCBHI Cel7A catalytic domain + cellopentaose
    • 4zzu - GgCBHI Cel7A catalytic domain + cellotetraose – Galactomyces geotrichum
    • 4zzw - GgCBHI Cel7A catalytic domain + cellobiose
    • 4zzt - GcCBHI Cel7A catalytic domain + cellotraiose
    • 5w11 - CBHI Cel7A catalytic domain + cellotriose – Myceliophthota thermophila
    • 5o5d - HaCBHI Cel7A catalytic domain – Hypocrea atroviridis
    • 5o59 - HaCBHI Cel7A catalytic domain + glucose
    • 4v20 - AfCBH Cel7A catalytic domain + disaccharide
    • 1h46 - PcCBHI Cel7D catalytic domain + propranolol
    • 1z3t - PcCBHI Cel7D catalytic domain + cellobiose
    • 1z3v - PcCBHI Cel7D catalytic domain + lactose
    • 1z3w - PcCBHI Cel7D catalytic domain + cellobioimidazole
  • Cellobiohydrolase II or Cellobiohydrolase Cel6A or exoglucanase 2
    • 3cbh – HjCBHII core
    • 1cb2 – HjCBHII catalytic domain (mutant)
    • 1hgw, 1hgy, 1oc6 – HjCBHII Cel6A catalytic domain (mutant)
  • Cellobiohydrolase II complex
    • 1bvw - HiCBHII catalytic domain + mannose – Humicola insolens
    • 4au0 - HjCBHII catalytic domain Cel6A (mutant) + cellobioside
    • 2bvw - HiCBHII Cel6A catalytic domain + glucose + cellotetraose
    • 1gz1, 1oc5 - HiCBHII Cel6A catalytic domain (mutant) + cellotetraose
    • 1oc7 - HiCBHII Cel6A catalytic domain (mutant) + cellopentaose
    • 1ocj - HiCBHII Cel6A catalytic domain + cellopentaose
    • 1ocb - HiCBHII Cel6A catalytic domain + fluorescent substrate
    • 1ocn - HiCBHII Cel6A catalytic domain (mutant) + isofagomine
    • 1qjw - TrCBHII Cel6A catalytic domain (mutant) + cellotetraose
    • 4ax6, 4ax7 - TrCBHII Cel6A catalytic domain (mutant) + cellobioside
    • 1qk0 - TrCBHII Cel6A catalytic domain + polysaccharide
    • 1qk2 - TrCBHII Cel6A catalytic domain + cellotetraose
    • 4a05 - CBHII Cel6A catalytic domain + cellotetraose – Chaetonium thermophilum
  • Other cellobiohydrolases
    • 1l1y – CtCBH CelS – Clostridium thermocellum
    • 1rq5 - CtCBHA (mutant)
    • 1ut9 - CtCBHA catalytic domain
    • 1sqj - GgCBH
    • 3a64, 3vog - CcCBH Cel6C catalytic domain - Coprinopsis cinerea
    • 3vof, 3voj - CcCBHI Cel6C catalytic domain (mutant)
    • 2mte – CBH CelS residues 673-741 – Ruminiclostridium thermocellum - NMR
  • Other cellobiohydrolases binary complex
    • 1l2a - CtCBH CelS + glucose
    • 2ebs – GgCBH (mutant) + heptasaccharide
    • 4avn - CBH Cel6B + cellobiose – Thermobifidia fusca
    • 3a9b, 3voh - CcCBHI Cel6C catalytic domain + cellobiose
    • 3abx, 3voi - CcCBHI Cel6C catalytic domain + cellotriose
    • 4v20 - AfCBH Cel7A + disaccharide

References

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Karsten Theis