Sandbox Reserved 1546: Difference between revisions
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==Relevance== | ==Relevance== | ||
It is known that the 5h86 Human Gcn5 enzyme functions as an acetyltransferase that regulates transcription by acetylating the N-terminal tails of histones <ref name = "Structural basis for acyl-group discrimination by human Gcn5L2"/>. The experiment was tested on Gcn5 (Gcn5L2), more specifically the lysine acetylation of this enzyme <ref name = "Structural basis for acyl-group discrimination by human Gcn5L2"/>. This is important to understand because the acyltransferase activity of the Gcn5L2 becomes much weaker with increasing acyl chain length <ref name = "Structural basis for acyl-group discrimination by human Gcn5L2"/>. The researchers were inspired by previous studies that identified a chemically diverse array of lysine acyl modification in vivo, and more specifically - the acyl chain of acetyltransferase specificity in the human Gcn5 <ref name = "Structural basis for acyl-group discrimination by human Gcn5L2"/>. In short, they want to experiment and test which acyl-chain donor had the highest enzymatic activity and to characterize the specificity of the acyl-chain of the human Gcn5, which catalyzes the acetylation of histone peptides much quicker than other methods like propionylation or butyrylation <ref name = "Structural basis for acyl-group discrimination by human Gcn5L2"/>. Through the experiment, it was found that via this method, the active sites of Gcn5 can accommodate longer acyl chains without many structural rearrangements <ref name = "Structural basis for acyl-group discrimination by human Gcn5L2"/>. | It is known that the 5h86 Human Gcn5 enzyme functions as an acetyltransferase that regulates transcription by acetylating the N-terminal tails of histones <ref name = "Structural basis for acyl-group discrimination by human Gcn5L2"/>. The experiment was tested on Gcn5 (Gcn5L2), more specifically the lysine acetylation of this enzyme <ref name = "Structural basis for acyl-group discrimination by human Gcn5L2"/>. This is important to understand because the acyltransferase activity of the Gcn5L2 becomes much weaker with increasing acyl chain length <ref name = "Structural basis for acyl-group discrimination by human Gcn5L2"/>. The researchers were inspired by previous studies that identified a chemically diverse array of lysine acyl modification in vivo, and more specifically - the acyl chain of acetyltransferase specificity in the human Gcn5 <ref name = "Structural basis for acyl-group discrimination by human Gcn5L2"/>. In short, they want to experiment and test which acyl-chain donor had the highest enzymatic activity and to characterize the specificity of the acyl-chain of the human Gcn5, which catalyzes the acetylation of histone peptides much quicker than other methods like propionylation or butyrylation <ref name = "Structural basis for acyl-group discrimination by human Gcn5L2"/>. Through the experiment, it was found that via this method, the active sites of Gcn5 can accommodate longer acyl chains without many structural rearrangements <ref name = "Structural basis for acyl-group discrimination by human Gcn5L2"/>. | ||
<p></p> | <p>This experiment was completed in various parts:</p> | ||
<p>'''Protein Expression and Purification'''</p> | |||
<p>• A plasmid encoding the His-tagged catalytic domain of human Gcn5L2 under T7 induction was obtained. The protein was expressed and purified. The purified protein was dialyzed into 20MM and concentrated to 9 mh ml- flash-frozen in liquid nitrogen and stored at -80 C.</p> | |||
<table><tr><td colspan='2'></td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCO:BUTYRYL+COENZYME+A'>BCO</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | |||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histone_acetyltransferase Histone acetyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.48 2.3.1.48] </span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5h86 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h86 OCA], [http://pdbe.org/5h86 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5h86 RCSB], [http://www.ebi.ac.uk/pdbsum/5h86 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5h86 ProSAT]</span></td></tr> | |||
</table> | |||
== References == | == References == | ||
<references/> | <references/> | ||