5zw9: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 5zw9 is ~~ON HOLD until Paper Publication~~

==Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium==

~~Authors~~: ~~Deka~~, G., ~~Benazir~~, J.F., ~~Kalyani~~, J.N., ~~Savithri~~, H.S., ~~Murthy~~, M.~~R.N~~.

== Structural highlights ==

<table><tr><td colspan='2'>[[5zw9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZW9 OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZW9 FirstGlance].

~~Description~~: ~~Crystal structure~~ of ~~Pyridoxal kinase~~ (~~PdxK~~) ~~from Salmonella typhimurium~~

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PE4:2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL'>PE4</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>

[[Category: ~~Unreleased~~ Structures]]

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/Pyridoxal_kinase Pyridoxal kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.35 2.7.1.35] </td></tr>

[[Category: ~~Kalyani~~, J.N]]

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zw9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zw9 OCA], [http://pdbe.org/5zw9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zw9 RCSB], [http://www.ebi.ac.uk/pdbsum/5zw9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zw9 ProSAT]</td></tr>

</table>

== Function ==

[[http://www.uniprot.org/uniprot/A0A0M0PWM4_SALER A0A0M0PWM4_SALER]] B6-vitamer kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxine (PN), pyridoxal (PL), and pyridoxamine (PM), forming their respective 5'-phosphorylated esters, i.e. PNP, PLP and PMP.[HAMAP-Rule:MF_01638]

__TOC__

</StructureSection>

[[Category: Large Structures]]

[[Category: Pyridoxal kinase]]

[[Category: Benazir, J F]]

[[Category: Deka, G]]

[[Category: ~~Savithri~~, ~~H.S~~]]

[[Category: Kalyani, J N]]

[[Category: Murthy, M.R.N]]

[[Category: Murthy, M R.N]]

[[Category: ~~Benazir~~, ~~J.F~~]]

[[Category: Savithri, H S]]

[[Category: Bound phosphate]]

[[Category: Salmonella typhimurium]]

[[Category: Transferase]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 5zw9 is ON HOLD  until Paper Publication
+==Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium==
+<StructureSection load='5zw9' size='340' side='right'caption='[[5zw9]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-Authors: Deka, G., Benazir, J.F., Kalyani, J.N., Savithri, H.S., Murthy, M.R.N.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5zw9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZW9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZW9 FirstGlance]. <br>
-Description: Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PE4:2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL'>PE4</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyridoxal_kinase Pyridoxal kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.35 2.7.1.35] </span></td></tr>
-[[Category: Kalyani, J.N]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zw9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zw9 OCA], [http://pdbe.org/5zw9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zw9 RCSB], [http://www.ebi.ac.uk/pdbsum/5zw9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zw9 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/A0A0M0PWM4_SALER A0A0M0PWM4_SALER]] B6-vitamer kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxine (PN), pyridoxal (PL), and pyridoxamine (PM), forming their respective 5'-phosphorylated esters, i.e. PNP, PLP and PMP.[HAMAP-Rule:MF_01638]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Pyridoxal kinase]]
+[[Category: Benazir, J F]]
 [[Category: Deka, G]]
-[[Category: Savithri, H.S]]
+[[Category: Kalyani, J N]]
-[[Category: Murthy, M.R.N]]
+[[Category: Murthy, M R.N]]
-[[Category: Benazir, J.F]]
+[[Category: Savithri, H S]]
+[[Category: Bound phosphate]]
+[[Category: Salmonella typhimurium]]
+[[Category: Transferase]]