4z5s

Crystal structure of apo-form of aldehyde deformylating oxygenase from Synechocystis sp.PCC 6803

spinqualitylabelsall models 4z5s, resolution 1.58Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 4z5s is a 1 chain structure with sequence from Syny3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Gene: sll0208 (SYNY3) Activity: Octadecanal decarbonylase, with EC number 4.1.99.5 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function [ALDEC_SYNY3] Catalyzes the decarbonylation of fatty aldehydes to alkanes. Requires the presence of ferredoxin, ferredoxin reductase and NADPH for in vitro decarbonylase activity (By similarity). Involved in the biosynthesis of alkanes, mainly heptadecane and pentadecane.[HAMAP-Rule:MF_00931] Publication Abstract from PubMed BACKGROUND: Aldehyde-deformylating oxygenase (ADO) is a key enzyme involved in the biosynthetic pathway of fatty alk(a/e)nes in cyanobacteria. However, cADO (cyanobacterial ADO) showed extreme low activity with the k cat value below 1 min-1, which would limit its application in biofuel production. To identify the activity related key residues of cADO is urgently required. RESULTS: The amino acid residues which might affect cADO activity were identified based on the crystal structures and sequence alignment of cADOs, including the residues close to the di-iron center (Tyr39, Arg62, Gln110, Tyr122, Asp143 of cADO-1593), the protein surface (Trp 178 of cADO-1593), and those involved in two important hydrogen bonds (Gln49, Asn123 of cADO-1593, and Asp49, Asn123 of cADO-sll0208) and in the oligopeptide whose conformation changed in the absence of the di-iron center (Leu146, Asn149, Phe150 of cADO-1593, and Thr146, Leu148, Tyr150 of cADO-sll0208). The variants of cADO-1593 from Synechococcus elongatus PCC7942 and cADO-sll0208 from Synechocystis sp. PCC6803 were constructed, overexpressed, purified and kinetically characterized. The k cat values of L146T, Q49H/N123H/F150Y and W178R of cADO-1593 and L148R of cADO-sll0208 were increased by more than two-fold, whereas that of R62A dropped by 91.1%. N123H, Y39F and D143A of cADO-1593, and Y150F of cADO-sll0208 reduced activities by </= 20%. CONCLUSIONS: Some important amino acids, which exerted some effects on cADO activity, were identified. Several enzyme variants exhibited greatly reduced activity, while the k cat values of several mutants are more than two-fold higher than the wild type. This study presents the report on the relationship between amino acid residues and enzyme activity of cADOs, and the information will provide a guide for enhancement of cADO activity through protein engineering. Identification of residues important for the activity of aldehyde-deformylating oxygenase through investigation into the structure-activity relationship.,Wang Q, Bao L, Jia C, Li M, Li JJ, Lu X BMC Biotechnol. 2017 Mar 16;17(1):31. doi: 10.1186/s12896-017-0351-8. PMID:28302170 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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