Exosome

Exosome

spinqualitylabelsall models Exosome complex containing exonuclease 1 (green), exonuclease 2 (grey) and exosome complex RNA-binding protein 1 (wheat) complex with PEG400 (pdb code 2je6). Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D The Exosome complex (or just- Exosome) is a multi-protein complex capable of degrading various types of RNA molecules. The Exosome complex is found in eukaryotic cell, and also in archaea, while in bacteria it is found as a simpler complex (but it has the same function). Function In order to see the structure of the protein complex, press Exosome. Enzymatic function The exosome is primarily a 3'-5' exoribonuclease, meaning that it degrades RNA molecules from their 3' end. In eukaryotes it also have an endoribonucleolytic function, meaning it cleaves RNA at sites within the molecule. Substrates The exosome is involved in the degradation and processing of a wide variety of RNA species. Substrates of the exosome include messenger RNA, ribosomal RNA, and many species of small RNAs. Disease Autoimmunity The exosome complex is the target of autoantibodies, which are known to be found in people that suffer from various autoimmune diseases (especially PM/Scl overlap syndrome). In the autoimune diseases, antibodies are mainly directed against two of the proteins of the complex, called PM/Scl-100 and PM/Scl-75. Cancer treatment The Exosome is found to be inhibited by a cancer chemotherapy drug, which called antimetabolite fluorouracil. This drug is one of the most successful drugs for treating solid tumors. Neurological disorders Mutations in Exosome component 3 cause pontocerebellar hypoplasia and spinal motor neuron disease. Structural highlights The central machinery of exosome is shaped like a barrel, with its RNA cleavage machinery sheltered in a groove inside. The core of the Exosome complex is made of a ring, which is consisting of six RNases proteins (Rnase PH-like proteins), and other proteins are attached. You can also view the complex in a ribbon view. 3D structures of exosome Exosome 3D structures

3D structures of exosome

Updated on 25-June-2019

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• Exosome

• • Exosome 3D structures – hRRP6 HRDC domain – human - NMR
    
  • 3saf, 3sag, 3sah – hRRP6 catalytic domain (mutant)
    
  • 6ieg – hMTR4
    
  • 6ieh – hMTR4 + NRDE2
    
  • 2nn6 – hCSL4 + RRP40 + RRP41 + RRP42 + RRP43 + RRP44 + RRP45 + RRP46 + RRP4 + MTR3
    
  • 2je6, 2br2 – SsRRP4 + RRP41 + RRP42 – Sulfolobus solfataricus
    
  • 2jeb - SsRRP4 + RRP41 + RRP42 + exonuclease 1 + RNA-binding protein 1 + Mn
    
  • 2ba0 – AfRRP4 + RRP41 + RRP42 – Archaeoglobus fulgidus
    
  • 2ba1 – AfCSL4 + RRP41 + RRP42
    
  • 2hbj, 2hbk – yRRP6 (mutant) - yeast
    
  • 2ja9 – yRRP6
    
  • 2hbl, 2hbm – yRRP6 (mutant) + nucleotide
    
  • 4wfc – yRRP6 +RRP47
    
  • 4wfd – yRRP6 +RRP47 + MTR4
    
  • 2wp8 – yRRP45 + SKI6 + DIS3
    
  • 5okz – yCSL4 + RRP40 + RRP42 + RRP43 + RRP45 + RRP46 + RRP4 + SKI6 + MTR3 + M-phase phosphoprotein 6
    
  • 5g06 – yCSL4 + RRP40 + RRP42 + RRP43 + RRP45 + RRP46 + RRP4 + RRP6 + SKI6 + MTR3 + superkiller protein 7 + DIS3
    
• Exosome complex with RNA
  • 6h25 – hCSL4 + RRP40 + RRP41 + RRP42 + RRP43 + RRP44 + RRP45 + RRP46 + RRP4 + MTR3 + M-phase phosphoprotein 6 + RNA – Cryo EM
    
  • 6d6r, 6d6q – hCSL4 + RRP40 + RRP41 + RRP42 + RRP43 + RRP44 + RRP45 + RRP46 + RRP4 + MTR3 + MTR4 + component 10 + M-phase phosphoprotein 6 + DNA/RNA + RNA – Cryo EM
    
  • 2jea - SsRRP4 + RRP41 + RRP42 + exonuclease 1 + RNA-binding protein 1 + RNA
    
  • 3m7n – AfCSL4 + RRP41 + RRP42 + RNA
    
  • 2m85 – AfCSL4 + RRP41 (mutant) + RRP42 (mutant) + RNA
    
  • 2vnu, 5c0y – yRRP6 + RNA
    
  • 4ifd – yCSL4 + RRP40 + RRP41 + RRP42 + RRP43 + RRP44 + RRP45 + RRP46 + RRP4 + MTR3 + RNA
    
  • 4oo1 – yCSL4 + RRP40 + RRP42 + RRP43 + RRP45 + RRP46 + RRP4 + RRP6 + SKI6 + MTR3 + RNA
    
  • 5vzj – yCSL4 + RRP40 + RRP42 + RRP43 + RRP45 + RRP46 + RRP4 + RRP6 + SKI6 + MTR3 + M-phase phosphoprotein 6 + DIS3 + RNA
    
  • 5k36, 5c0x, 5c0w – yCSL4 + RRP40 + RRP42 + RRP43 + RRP45 + RRP46 + RRP4 + RRP6 + SKI6 + MTR3 + DIS3 + RNA
    
  • 5jea – yCSL4 + RRP40 + RRP42 + RRP43 + RRP45 + RRP46 + RRP4 + RRP6 + SKI6 + MTR3 + superkiller protein 7 + DIS3 + RNA
    
  • 5jea – yCSL4 + RRP40 + RRP42 + RRP43 + RRP45 + RRP46 + RRP4 + RRP6 + SKI6 + MTR3 + LRP1 + RNA
    

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Nitzan Dubovski, Michal Harel