User:Karsten Theis/Animation course: Difference between revisions
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<jmol><jmolLink><script>select protein; cartoon only; color group</script><text>rainbow cartoon</text></jmolLink> </jmol> | <jmol><jmolLink><script>select protein; cartoon only; color group</script><text>rainbow cartoon</text></jmolLink> </jmol> | ||
<jmol><jmolLink><script>select protein; cartoon only; color magenta</script><text>magenta cartoon</text></jmolLink> </jmol> | <jmol><jmolLink><script>select protein; cartoon only; color magenta</script><text>magenta cartoon</text></jmolLink> </jmol> | ||
<jmol><jmolLink><script>select protein; cartoon only; color structure</script><text>helix-emphasize cartoon</text></jmolLink> </jmol> | <jmol><jmolLink><script>select protein; cartoon only; color structure</script><text>helix-emphasize cartoon</text></jmolLink> </jmol> | ||
<jmol><jmolLink><script>select protein; cartoon off; </script><text>no protein</text></jmolLink> </jmol> | <jmol><jmolLink><script>select protein; cartoon off; </script><text>no protein</text></jmolLink> </jmol> | ||
===Save some orientations=== | ===Save some orientations=== | ||
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<jmol><jmolLink><script>script inline @{speed + x1}</script><text>V1</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x2}</script><text>V2</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x3}</script><text>V3</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x4}</script><text>V4</text></jmolLink></jmol> | <jmol><jmolLink><script>script inline @{speed + x1}</script><text>V1</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x2}</script><text>V2</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x3}</script><text>V3</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x4}</script><text>V4</text></jmolLink></jmol> | ||
==Dock a ligand== | |||
<jmol><jmolLink><script>script 52/520489/Ligand_pocket/2.spt; select protein; color group; center selected; select BF0; set picking dragselected; set allowrotateselected; temp0 = {BF0}.xyz.all</script><text>click to prepare</text></jmolLink></jmol> | <jmol><jmolLink><script>script "http://proteopedia.org/scripts/52/520489/Ligand_pocket/2.spt"; select protein; color group; center selected; select BF0; set picking dragselected; set allowrotateselected; temp0 = {BF0}.xyz.all</script><text>click to prepare</text></jmolLink></jmol> | ||
Store ligand position: | Store ligand position: | ||
