Histone 3D structures

3D Structures of histone

Updated on 04-December-2019

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• Histone
  • 1yqa – yH1 (mutant) – yeast – NMR
    
  • 1uss, 1ust, 1uhm – yH1 globular domain - NMR
    
  • 1ghc – cH1 – chicken - NMR
    
  • 2xd7, 1zr3, 1zr5, 2fxk – hH2A macro domain – human
    
  • 4cay – hH2A +H2B
    
  • 1yd9 – H2A macro domain – rat
    
  • 1ku5 – HPHA – Pyrococcus horikoshii
    
  • 1b67, 1b6w, 1a7w, 1hta – MfHMFA – Methanococcus fervidus
    
  • 1bfm – MfHB - NMR
    
  • 1f1e – H – Methanopyrus kandleri
    
  • 1hst – cH5
    
  • 3iid, 3iif – H2A macro domain + ADP-ribose
    
  • 2g9a, 2g99, 2h13 – H3 + WD-repeat protein
    
  • 1pfb – H3 + polycomb protein – Strongylocentrus purpuratus
• Nucleosome core
  • 6n89, 6n88 – hH1 + importin – Cryo EM
    
  • 6h8p – hH1 + histone-lysine methyltransferase
    
  • 3r45 - hH4 + H3-like centromeric protein + Holliday junction recognition protein
    
  • 3nqj, 3nqu - hH4 + H3-like centromeric protein
    
  • 5vey - hH2A + H2B + polyubiquitin
    
  • 5fug - hH2A + H2B + YL-1
    
  • 4nft - hH2A + H2B + ANP32E
    
  • 6miq, 6mio, 6min – hH3 + TFIID
    
  • 6mim, 6mil – hH3 + AF9
    
  • 5ja4, 5bnv – hH3.3 + H4 + TONSL + MCM2
    
  • 5bo0, 5bnx – hH3.2 + H4 + ASF1B + MCM2
    
  • 6mlc - hH4 + histone-lysine methyltransferase
    
  • 6qxz – hH3.3 + histone-lysine methyltransferase - NMR
    
  • 6o7g - XlH4 + histone-lysine methyltransferase – NMR
    
  • 3qzs, 3qzt – XlH4 + nucleosome-remodeling factor subunit BPTF – Xenopus laevis
    
  • 4h9n, 4h9o, 4h9p, 4h9q, 4h9r, 4h9s, 4hga - XlH3.3 (mutant) + H4 + death domain-associated protein 6
    
  • 5kdm - XlH3.3 + H4 + death domain-associated protein + tegument protein
    
  • 2io5 - XlH3.1 + H4 + anti-silencing protein
    
  • 5g2e - XlH2A + H2B + NAP1
    
  • 6n1z - XlH2A + H2B + importin
    
  • 5bsa, 5bs7 – XlH3.2 + H4 + SPT2
    
  • 4eo5 - XlH3.2 (mutant) + H4 (mutant) + histone chaperone ASF1
    
  • 4ld9 - XlH3.2 + H4 + H2A + H2B + widom sequence reverse + SIR3
    
  • 2l5a - yH4/H3-like centromeric protein/SCM3
    
  • 2jss - yH2A/H2B + CHZ1 – NMR
    
  • 4wnn – yH32A + H2B + SPT2
    
  • 2hue - yH3 + H4 + anti-silencing protein
    
  • 2xql, 3c9k - cH3.2 + H4 + H2A + H2B – EM
    
  • 4uuz – DmH3 + H4 + DNA replication licensing factor – Drosophila melanogaster
    
  • 2yfv, 2yfw - H4 + H3-like centromeric protein + SCM3 – Kluyveromyces lactis
    
• Human nucleosome core + DNA
  • 3an2, 4x23 – hH4 + H2A + H2B + H3-like centromeric protein + DNA
    
  • 3av1, 2av2, 3av2, 3waa, 3wa9, 3w99, 3w98, 3w97, 3w96, 5x7x, 3a6n, 3afa, 2cv5, 5jrg, 5gxq, 5gt3, 5gt0, 5gsu, 5gse, 5cpk, 5cpj, 5cpi, 5b33, 5b32, 5b31, 5b2j, 5b2i, 5b24, 5b0z, 5b0y, 5ay8, 5avc, 5avb, 5av9, 5av8, 5av6, 5av5, 5z5t, 4ym6, 4ym5, 5y0c, 5onw, 5ong, 5omx – hH3.2 + H4 + H2A + H2B + DNA
    
  • 5x0y, 5x0x – hH3 + H4 + H2A + H2B + DNA + SNF2
    
  • 5z30 – hH3.1 + H4 + H2A (mutant) + H2B + DNA
    
  • 5y0d – hH3.1 + H4 + H2A + H2B (mutant) + DNA
    
  • 4qlc – hH3 + H4 + H2A + H2B + H5 + DNA
    
  • 6r25 – hH3 + H4 + H2A + H2B + NPAC + lysine-specific histone demethylase + DNA – Cryo EM
    
  • 3ayw, 3aze, 3azf, 3azg, 3azh - hH3.1 (mutant) + H4 + H2A + H2B + DNA
    
  • 6r94, 6r93 - hH3.1 + H4 + H2A + H2B + DNA – Cryo EM
    
  • 6r92, 6r91, 6r90, 6r8z, 6r8y - hH3.1 + H4 + H2A + H2B + DNA damage-binding protein + DNA – Cryo EM
    
  • 3azi, 3azj, 3azk, 3azl, 3azm, 3azn, 5b40 - hH3.1 + H4 (mutant) + H2A + H2B + DNA
    
  • 5e5a - hH3.2 + H4 + H2A + H2B + IE1 + DNA
    
  • 6hkt - hH3 + H2A + H2B + DNA
    
  • 5xf5, 5xf4, 5xf3 - hH3.1 + H4 + H2A + H2B + Ru derivative + DNA
    
• Xenopus nucleosome core + DNA
  • 6r1t - XlH3 + H2A + H2B + DNA – Cryo EM
    
  • 3mnn, 3o62, 3lz0, 3lz1, 3lel, 3kuy, 3c1b, 3c1c, 2nzd, 2fj7, 1zbb, 1s32, 1p34, 1p3a, 1p3b, 1p3f, 1p3g, 1p3i, 1p3k, 1p3l, 1p3m, 1p3o, 1p3p, 1m18, 1m19, 1m1a, 1kx3, 1kx4, 1kx5, 1aoi, 3reh, 3rei, 3rej, 3rek, 3rel, 3ut9, 3uta, 3utb, 5f99, 5dnn, 5dnm, 5cp6, 4z66, 4ys3, 4xzq, 5oy7, 5oxv - XlH3.2 + H4 + H2A + H2B + DNA
    
  • 6fq8, 6fq6, 6fq5, 6esi, 6esh, 6esg, 6esf - XlH3.2 + H4 + H2A + H2B + DNA – Cryo EM
    
  • 5nl0 - XlH3.2 + H4 + H2A + H2B + H1.0 + DNA
    
  • 6om3 - XlH3.2 + H4 + H2A + H2B + origin recognition complex + DNA
    
  • 6jm9 - XlH3.2 + H4 + H2A + H2B + histone-lysine methyltransferase + DNA – Cryo EM
    
  • 6o96, 6nqa, 6nog, 6nn6, 6nj9, 6jma, 6j99 - XlH3.2 + H4 + H2A + H2B + histone-lysine methyltransferase + ubiquitin + DNA – Cryo EM
    
  • 6iy3, 6iy2 - XlH3.2 + H4 + H2A + H2B + SNF2H + ADP + DNA – Cryo EM
    
  • 5o9g - XlH3.2 + H4 + H2A + H2B + CHD1 + DNA – Cryo EM
    
  • 6ftx - XlH3.1 + H4 + H2A + H2B + CHD1 + ubiquitin + DNA – Cryo EM
    
  • 6hts - XlH3.1 + H4 + H2A + H2B + RuvB + CHD1 + actin-related protein + DNA – Cryo EM
    
  • 6ne3 - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B + SNF2H + DNA – Cryo EM
    
  • 5mlu - XlH3.2 + H4 + H2A + H2B + PFV GAG peptide + DNA
    
  • 5kgf - XlH3.2 + H4 + H2A + H2B + 53BP1 + ubiquitin + DNA
    
  • 5hq2 - XlH3.2 + H4 + H2A + H2B + SRM1 + SetD8 + DNA
    
  • 4zux - XlH3.2 + H4 + H2A + H2B + Saga-associated factors + polyubiquitin + UBP8 + DNA
    
  • 4xuj - XlH3.2 + H4 + H2A + H2B + Ru derivative + DNA
    
  • 4xu9 - XlH3.2 (mutant) + H4 + H2A + H2B + Pt derivative + DNA
    
  • 4xu8 - XlH3.2 + H4 + H2A + H2B (mutant) + Pt derivative + DNA
    
  • 2f8n - XlH3.1 + H4 + H2A + H2B + H3 + H2A macro domain + DNA
    
  • 1zla – XlH3 + H4 + H2A + H2B + H3 + antigen + DNA
    
  • 3mgp, 3mgq, 3mgr, 3mgs, 3lja, 3b6f, 3b6g, 4j8u, 4j8v, 4j8w, 4j8x, 4kgc, 5xf6 - XlH3.2 + H4 + H2A + H2B + metal ion + DNA
    
  • 3kxb - XlH3.2 (mutant) + H4 + H2A + H2B (mutant) + DNA
    
  • 3kwq - XlH3.2 (mutant) + H4 + H2A + H2B + DNA
    
  • 3mvd - XlH3.2 + H4 + H2A + H2B + regulator of chromosome condensation + DNA
    
  • 3tu4 - XlH3.2 + H4 + H2A + H2B + regulatory protein SIR3 + DNA
    
  • 4r8p - XlH3.2 + H4 + H2A + H2B + polycomb complex protein + ring finger protein + DNA
    
  • 6r1u – XlH3.2 + H4 + H2A + H2B + lysine-specific histone demethylase + DNA – Cryo EM
    
  • 6k1p, 6jyl, 6iro – XlH3 + H4 + H2A + H2B + ISWI + ADP + DNA – Cryo EM
    
  • 6g0l – XlH3 + H4 + H2A + H2B + CHD1 + DNA – Cryo EM
    
• Other nucleosome core + DNA
  • 1u35 - mH3.1 + H2A + H2B + His2A macro domain + DNA – mouse
    
  • 5xm1, 5xm0 – mH3 + H4 + H2A + H2B + DNA
    
  • 1f66 - XlH3 + mH4 + hH2A + XlH2B + DNA
    
  • 5b1m, 5b1l - mH3 + H4 + H2A + H2B + DNA
    
  • 2aro, 1tzy, 1hq3, 2hio, 1hio - cH3 + H4 + H2A + H2B
    
  • 1eqz - cH3 + H4 + H2A + H2B + DNA
    
  • 2pyo, 2nqb, 3nqb - DmH3 + H4 + H2A + H2B + DNA
    
  • 5wcu - DmH3 + H4 + H2A + H2B + H5 + DNA
    
  • 4x23 - DmH3 + H4 + H2A + H2B + centromeric protein C + DNA
    
  • 6dzt - DmH3 + H4 + H2A + H2B + antibody + DNA
    
  • 6j51, 6j50, 6j4z, 6j4y, 6j4x, 6j4w, 6inq, 6i84, 6a5u, 6a5t, 6a5r, 6a5p, 6a5o, 6a5l – yH3.3 + H4 + H2A + H2B + RNA polymerase + RNA + DNA – Cryo EM
    
  • 6ir9 – yH3.3 + H4 + H2A + H2B + RNA polymerase + SPT4 + SPT5 + RNA + DNA – Cryo EM
    
  • 6gen, 6gej – yH3 + H4 + H2A + H2B + SWI1 + actin-like protein + vacuolar protein sorting-associated + RNA + DNA – Cryo EM
    
  • 1id3 - yH3 + H4 + H2A + H2B + DNA
    
  • 4jjn, 4kud - yH3 + H4 + H2A.2 + H2B.2 + SIR3 + DNA
    
  • 5zbb, 5zba - yH3 + H4 + RTT109 + ASF1
    
  • 5z3v, 5z3u, 5z3t, 5z3o, 5z3l - yH3.2 + H4 + H2A + H2B + SNF2 + ADP + DNA – Cryo EM
    

2aro, 1tzy, 1hq3, 2hio, 1hio - cH3 + H4 + H2A + H2B

• • 6fml – H3.2 + H4 + H2A + H2B + RuvB + actin-related protein + IES6 + DNA – Chaetomium thermophilum - Cryo EM
    

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