Sandbox Reserved 1559: Difference between revisions

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The <scene name='82/823083/Secondary_structure/1'>secondary structure</scene> of this protein is mostly composed of β-sheets with minimal areas of alpha-helices. Beta sheets provide a flat surface for interactions to occur.  
The <scene name='82/823083/Secondary_structure/1'>secondary structure</scene> of this protein is mostly composed of β-sheets with minimal areas of alpha-helices. Beta sheets provide a flat surface for interactions to occur.  


The tertiary structure creates a<scene name='82/823083/Aminobindingpocket/1'> binding pocket of amino acids</scene> that are important to the active site. His282 provides pi-stacking, Phe305 provides Hydrophobic contacts, and Tyr101 provides Hydrogen bonding. The tertiary structure also allows the NSL ligand to interact using its 4-hydroxy with the catalytic triad. LsdA can only cleave 4-hydroxystilbenes. The photo below shows the NSL ligand interacting in the binding pocket.
The tertiary structure creates a<scene name='82/823083/Aminobindingpocket/1'> binding pocket of amino acids</scene> that are important to the active site. His282 provides pi-stacking, Phe305 provides Hydrophobic contacts, and Tyr101 provides Hydrogen bonding. The tertiary structure also allows the NSL ligand to interact using its 4-hydroxy with the catalytic triad. LsdA can only cleave 4-hydroxystilbenes.  




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== Energy Transformation ==
== Energy Transformation ==
Phenylazophenol inhibits the LsdA-catalyzed cleavage of lignostilbene in a reversible, mixed fashion.  
Phenylazophenol inhibits the LsdA-catalyzed cleavage of lignostilbene in a reversible, mixed fashion. <ref>PMID 31292192</ref>