6jf7: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 6jf7 is ~~ON HOLD until Paper Publication~~

==K3U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii==

~~Authors~~: ~~Jung~~, K.H., ~~Ho, T~~.H., ~~Lee~~, I.H., ~~Kang~~, L.W.

== Structural highlights ==

<table><tr><td colspan='2'>[[6jf7]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JF7 OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JF7 FirstGlance].

~~Description~~: ~~K3U bound crystal structure~~ of ~~class I type b peptide deformylase from Acinetobacter baumannii~~

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=K3U:S-(2-oxo-2-phenylethyl)+(2R)-2-benzyl-4,4,4-trifluorobutanethioate'>K3U</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>

[[Category: ~~Unreleased~~ Structures]]

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </td></tr>

[[Category: ~~Lee~~, I.H]]

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jf7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jf7 OCA], [http://pdbe.org/6jf7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jf7 RCSB], [http://www.ebi.ac.uk/pdbsum/6jf7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jf7 ProSAT]</td></tr>

[[Category: Ho, T.H]]

</table>

[[Category: Kang, L.W]]

== Function ==

[[Category: ~~Jung~~, K.H]]

[[http://www.uniprot.org/uniprot/A0A0E1FIJ3_ACIBA A0A0E1FIJ3_ACIBA]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]

__TOC__

</StructureSection>

[[Category: Large Structures]]

[[Category: Peptide deformylase]]

[[Category: Ho, T H]]

[[Category: Jung, K H]]

[[Category: Kang, L W]]

[[Category: Lee, I H]]

[[Category: Hydrolase]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 6jf7 is ON HOLD  until Paper Publication
+==K3U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii==
+<StructureSection load='6jf7' size='340' side='right'caption='[[6jf7]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-Authors: Jung, K.H., Ho, T.H., Lee, I.H., Kang, L.W.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6jf7]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JF7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JF7 FirstGlance]. <br>
-Description: K3U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K3U:S-(2-oxo-2-phenylethyl)+(2R)-2-benzyl-4,4,4-trifluorobutanethioate'>K3U</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
-[[Category: Lee, I.H]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jf7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jf7 OCA], [http://pdbe.org/6jf7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jf7 RCSB], [http://www.ebi.ac.uk/pdbsum/6jf7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jf7 ProSAT]</span></td></tr>
-[[Category: Ho, T.H]]
+</table>
-[[Category: Kang, L.W]]
+== Function ==
-[[Category: Jung, K.H]]
+[[http://www.uniprot.org/uniprot/A0A0E1FIJ3_ACIBA A0A0E1FIJ3_ACIBA]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Peptide deformylase]]
+[[Category: Ho, T H]]
+[[Category: Jung, K H]]
+[[Category: Kang, L W]]
+[[Category: Lee, I H]]
+[[Category: Hydrolase]]