Sandbox Reserved 1601

This Sandbox is Reserved from Jan 13 through September 1, 2020 for use in the course CH462 Biochemistry II taught by R. Jeremy Johnson at the Butler University, Indianapolis, USA. This reservation includes Sandbox Reserved 1598 through Sandbox Reserved 1627.

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Mitochondrial Calcium Uniporter (MCU) (Heumann Test Page)

spinqualitylabelsall models Caption for this structure Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Overview Article One Article Two Article Three Article Four Article Five The mitochondrial calcium uniporter (MCU) complex is the main source of entry for calcium ions into the mitochondrial matrix from the intermembrane space. MCU channels exist in most eukaryotic life, but activity is regulated differently in each clade. The precise identity of the MCU wasn't discovered until 2011 and was discovered using a combination of NMR spectroscopy, cryo-electron microscopy, and x-ray crystallography. Identification of the structure was difficult because it has no apparent sequence similarity to other ion channels. However, like other ion channels, it is incredibly selective and efficient. The MCU has the ability to only allow calcium ions into the mitochondrial matrix at a rate of 5,000,000 ions per second even though potassium ions are over 100,000 times more abundant in the intermembrane space. Under resting conditions, the calcium concentration in the mitochondria is about the same as in the cytoplasm, but when stimulated, it can increase calcium concentration 10-20-fold. Mitochondria-associated ER membranes (MAMs) exist between mitochondria and the endoplasmic reticulum, the two largest cellular stores of calcium, to allow for efficient transport of calcium ions. The transfer of electrons through respiratory complexes I-IV produces the energy to pump hydrogen ions into the intermembrane space (IMS) and create the proton electrochemical gradient potential. This negative electrochemical potential is the driving force that moves positively charged calcium ions into the mitochondrial matrix. Regulation of the uptake and efflux of calcium is important to increase calcium levels enough to activate certain enzymes, but also avoid calcium overload and apoptosis. Mitochondrial calcium increases ATP production by activating pyruvate dehydrogenase, α-ketoglutarate dehydrogenase, and isocitrate dehydrogenase in the Krebs cycle. Therefore, deficiency of MCU leads to decrease of enzyme activity and of oxidative phosphorylation. Structure Mitochondrial Calcium Uniporter Complex The actual mitochondrial calcium uniporter exists as a large complex (around 480 kDa in humans) made up of both pore-forming and regulatory subunits. The mitochondrial uptake proteins (MICU1 and MICU2) are regulatory proteins in the MCU complex that exist in the IMS and contain EF hand domains for calcium binding to control transport through the channel of the MCU complex. When calcium ion concentration in the IMS is low, MICU1 and 2 block the MCU to prevent uptake of calcium. In the presence of high calcium concentrations, more calcium binds to these regulatory proteins and they undergo a conformational change to allow calcium ions through the MCU and into the matrix. In fact, when calcium levels are below 500 nM, MICU1 can block movement of calcium by itself, calcium levels between 500 nM and 1,500 nM require both MICU1 and MICU2 to block ion entry, and any concentration over 1,500 nM is sufficient for calcium entry. Another regulatory protein, MCUR1 is a cofactor in the assembly of the respiratory chain rather than an essential part of the uniporter. Though the MCU is able to take up calcium independently, there are two other pore-forming subunits, the MCUb and the essential MCU regulator (EMRE). MCUb is similar to MCU, but certain amino acids differ and make it an inhibitory subunit. The EMRE is located in the IMS and connects MICU1 and MICU2 to the MCU. It also contributes to regulation of calcium intake in the MCU. Mitochondrial Calcium Uniporter Structure The MCU was originally thought to be composed of a pentamer of five identical subunits, but it is now known to exist as a dimer of dimers. More specifically, it is composed of two coiled-coil domains and two transmembrane domains. The hydrophobic transmembrane domain is located in the inner mitochondrial membrane (IMM) and the hydrophilic coiled-coil domain exists in the mitochondrial matrix. The transmembrane domain (TMD) consists of eight separate helices (TM1 and TM2 from each subunit) that are connected by mostly hydrophobic amino acids in the IMS and has four-fold symmetry. TM1 packs tightly against TM2 from the neighboring subunit which conveys a sense of domain-swapping. This section of the MCU can be roughly divided into a narrow outer leaflet portion with the selectivity filter and lined by the TM2 helices and a wide inner leaflet. Past the transmembrane domain, the N-terminal domains of the TM1 helices extend into the matrix and form coiled-coils with a C-terminal helix. These "legs" are separated from each other which allows enough space for calcium ions to diffuse out into the matrix. Additionally, this domain is responsible for assembly of the MCU and post-translational modification. Finally, each leg ends in a non-translated domain (NTD). While the MCU can intake calcium without the NTD, it may have regulatory functions and the ability to bend transmembrane helices to constrict the pore. Selectivity Filter The selectivity filter of the MCU is composed by many acidic amino acids near the narrow mouth of the channel which leads to high affinity for calcium (dissociation constant of less than 2nM). The arrangement of the highly conserved WDXXEP motif in the TM2 helices form a ring in the pore to which calcium ions are attracted. The structure in the animation is the MCU of Cyphellophora europaea so every amino acid named here specifically is that of C. europaea, but most of these residues are highly conserved across all species, though residue number may change. Though not part of the WDXXEP motif, Asp221 is present at the mouth of the MCU and serves to congregate positively charged calcium ions at the entrance of the channel. The WDXXEP motif consists of Trp224 at the N-terminal end, Asp225, Glu228, and Pro229. Trp224 and Pro229 pack against each other and are oriented towards the pore, but only serve to stabilize Asp225 and Glu228, not interact with calcium ions. The X residues (Val226 and Met227 in this case) face away from the pore and are exposed to the membrane. The negatively charged side chains of Asp225 and Glu228 point towards the pore and form rings of radius 2.5Å and 1Å, respectively. It's a combination of these radii and charges that account for the selectivity of the MCU. For example, potassium has an ionic radius of 1.38Å which is much larger than the 1.00Å ionic radius of calcium. Additionally, even though sodium ions have a similar ionic radius, the +2 charge on calcium is better matched to coordination with the glutamate residues. Movement of Calcium Microscopy has revealed three sites in the MCU channel of roughly spherical density equally spaced 6Å apart. Sites 1 and 2 lie within the selectivity filter so they can easily be assumed to contain calcium, but site 3 could be calcium or some other small molecule. Site 1 is positioned in the ring formed by Asp225 residues and there is a distance of 4Å between the center of the site and each carboxylate group indicating presence of water. The second site is positioned in the ring formed by Glu228 and there is a distance of 2.8Å between the carboxylate group of each residue and the middle of the site indicating absence of water. It is hypothesized that one calcium ion coordinated with water in site 1 loses its water and moves to site 2 and a calcium ion moves from the IMS into site 1. Meanwhile, a different calcium ion moves from site 2 to site 3 or the mitochondrial matrix. Mutations There are a number of mutations that completely eliminate calcium uptake by the MCU. For example, mutation of W,D,E, or P of the WDXXEP motif altered the highly conserved selectivity filter and completely eliminated calcium uptake. For example, even mutating Glu228 to an aspartate significantly changed the dimensions of the pore and inhibited uptake of calcium. However, mutation of either X residue was not detrimental to calcium uptake. Furthermore, mutation of a tyrosine residue directly below the selectivity filter substantially impaired calcium intake and proper protein folding. The residue on TM1 that affected calcium uptake the most in human MCU was Trp317 which has a side chain constituting a primary contact point between TM1 and TM2. Mutation of Phe326 or Gly331 of the TM1-TM2 linker in human MCU affected the linker conformation and configuration of the pore entrance and impaired calcium intake. Medical Relevance The MCU has a large role in disease because of its effect on apoptosis and cell signaling. The overload of the mitochondrial matrix with calcium leads to release of cytochrome c, overproduction of reactive oxygen species, mitochondrial swelling, and the opening of the mitochondrial permeability transition pore (mPTP) which all lead to apoptotic cell death. This connection between mitochondrial calcium and apoptosis makes the MCU dysregulation a large contributor to cell death and disease. Calcium machinery in the mitochondria are targets for proto-oncogenes and tumor suppressors for this very reason. Apoptosis can either be induced or repressed. Furthermore, external stimuli can activate receptors in the endoplasmic reticulum that release calcium and activate signal transductions. Sequestration of calcium in the mitochondria is vital to shut down these activations, so any impact in movement of calcium ions can cause a wide variety of diseases. Neurodegenerative Disorders Disruption in calcium homeostasis leads to a wide range of neurodegenerative disorders. The MCU complex has been identified to play a large role in neuromuscular disease because of a loss or mutation of MICU1. This causes myopathy, learning difficulties, and progressive movement disorders which can be lethal. In Alzheimer's disease, the buildup of amyloid-β plaques in the brain leads to increased calcium uptake in neurons and cell death. Similarly, in early onset Parkinson's Disorder, degradation of MICU1 by the protein ligase Parkin leads to increased mitochondrial calcium uptake, overload, and death. Finally, disrupted glutamate homeostasis in astrocytes and neurons leads to calcium overload and cell death via excitotoxicity in Amyotrophic Lateral Sclerosis (ALS). Diabetes Calcium homeostasis dysregulation has also been proven to be instrumental in obesity, insulin resistance, and type-II diabetes. The intracellular calcium concentrations in primary adipocytes from obese human subjects was found to be elevated. Any inhbition of downstream calcium signaling could decrease movement of the GLUT4 glucose transporter and glucose uptake. Additionally, ablation of MCU in β-cells in the pancreas demonstrated a decrease in cellular ATP concentration following glucose stimulation which resulted in decreased glucose-stimulated insulin secretion. Furthermore, MAMs have been shown to cause glucose intolerance and mitochondrial dysfunction in primary hepatocytes in mice. Subsequent reinforcement of these MAMs has been shown to increase insulin sensitivity and glucose homeostasis. Regulation and Inhibition The most well-known and commonly used inhibitor of calcium uptake into the mitochondria is ruthenium red (RuRed). RuRed effectively inhibits calcium uptake without affecting mitochondrial respiration or calcium efflux. Additionally, it has been shown to mitigate tissue damage due to IRI and slow cancer cell migration. The issue with RuRed is that its purification has always been a challenging matter. Interestingly enough, this led to even more developments in the search for an inhibitor. Many scientists had observed that impure RuRed actually had greater inhibition than pure RuRed. One of the common minor impurities of RuRed, Ru360, was found to be the active component of the RuRed mixtures, meaning it responsible for calcium inhibition. Ru360 is now commercially available and has been widely used for the study of calcium-dependent cellular processes and as a therapeutic agent. Very little is known about its mechanism of inhibtion, but studies show that it interacts with the DXXE motif of the loop connecting the TM1 and TM2 helices. Ru360 was a very successful inhibitor, but it showed low cell permeability. So, a new inhibitor called Ru265 was developed which could be easily synthesized and didn't need chromatographic purification. Ru265 had all of the benefits of Ru360, with with twice the cell permeability. Additionally, the same mutations didn't seem to affect it. Mutations of D261 and S259 in human MCU reduced inhibitory effect of Ru360, but not Ru265. Additionally, there were other mutations that affected Ru265, but not Ru360. This shows how much more research is needed before a mechanism is understood for any inhibitor of the MCU. This is a sample scene created with SAT to color by Group, and another to make a transparent representation of the protein. 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